Candidatus Phaeomarinobacter ectocarpi: BN1012_Phect1730
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Entry
BN1012_Phect1730 CDS
T09856
Name
(GenBank) Ribonuclease D related protein
KO
K03684
ribonuclease D [EC:
3.1.13.5
]
Organism
pect
Candidatus Phaeomarinobacter ectocarpi
Brite
KEGG Orthology (KO) [BR:
pect00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
pect03016
]
BN1012_Phect1730
Enzymes [BR:
pect01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.5 ribonuclease D
BN1012_Phect1730
Transfer RNA biogenesis [BR:
pect03016
]
Prokaryotic type
3'processing and CCA adding factors
3'processing factors
BN1012_Phect1730
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol_A_exo1
RNase_H_2
Type_III_SycN
Motif
Other DBs
NCBI-ProteinID:
CDO59944
UniProt:
X5MFL7
LinkDB
All DBs
Position
138176..138787
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AA seq
203 aa
AA seq
DB search
MTTTLHKGDLPDGLDLGAVVAVDTETMGLNPHRDELCVVQLSSGDGTAHVVQMDRATYDC
PNLKKMFADPACVKLFHFARFDVGMVRKYLGVECAPVYCTKIASKLVRTYTDRHGLKDLS
RELLGIDMSKQQQSSDWGADTLSEAQLAYAASDVLHLHKLKERLDMMLAREGRTELAQAC
FDFLPTRASLDLAGWPDVDIFSH
NT seq
612 nt
NT seq
+upstream
nt +downstream
nt
atgacaacaacactccacaagggcgatctgcctgacggtctggacctcggcgcggtcgtc
gcggtcgacaccgaaaccatgggtctcaacccgcatcgtgatgaactgtgcgtggtgcag
ctttcctcaggcgacggcaccgcccatgtggtgcagatggaccgggcgacctatgactgc
ccgaacctcaaaaaaatgtttgctgacccggcctgcgtgaagctctttcacttcgcgcgc
tttgacgttggcatggtgcgcaaatacctgggcgtcgaatgtgcccctgtctattgcacc
aagatcgcatccaagctggtgcgcacctacacggaccgccacgggctcaaggatctgagc
cgcgaattgctgggcattgatatgtcgaagcagcagcaaagctcggactggggtgccgat
accctgagcgaggcacagctggcctatgctgcctcagacgtgctgcatctccacaagctc
aaagagcgcctcgatatgatgctggcgcgcgaggggcgcacagagctggctcaggcctgt
tttgacttcctgcccacccgcgcgagccttgatctcgccggttggccggacgtggatatt
ttttcacactag
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