Candidatus Phaeomarinibacter ectocarpi: BN1012_Phect2101
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Entry
BN1012_Phect2101 CDS
T09856
Name
(GenBank) ATP-dependent DNA helicase RecQ
KO
K03654
ATP-dependent DNA helicase RecQ [EC:
5.6.2.4
]
Organism
pect
Candidatus Phaeomarinibacter ectocarpi
Pathway
pect03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pect00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
BN1012_Phect2101
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pect03019
]
BN1012_Phect2101
03400 DNA repair and recombination proteins [BR:
pect03400
]
BN1012_Phect2101
Enzymes [BR:
pect01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
BN1012_Phect2101
Messenger RNA biogenesis [BR:
pect03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
BN1012_Phect2101
DNA repair and recombination proteins [BR:
pect03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
BN1012_Phect2101
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RQC
DEAD
HRDC
Helicase_C
RecQ_Zn_bind
ResIII
DUF7302
Motif
Other DBs
NCBI-ProteinID:
CDO60314
UniProt:
X5MG13
LinkDB
All DBs
Position
complement(522267..524096)
Genome browser
AA seq
609 aa
AA seq
DB search
MADARALLKTVFGFDDFRPGQEDIVASILGGQDVLAIMPTGAGKSLCYQLPALMRDGLTV
VVSPLIALMRDQVAALQANGVEAGALTSNTDPYEAERIHQAIDDGVLKLLFMAPERLSIA
SGLLQRAGVSMLAIDEAHCVSQWGHDFRPDYLKIGALRDQLSAQLGHIQITAFTATADEE
TRGEIAAKLFTQEPDVFLGGFDRPNLFLAFEPKAQPKTQVADFVAQHPGEAGIVYCSSRA
KTESFAEHLQSKGVEALAYHAGLDGETRQIRQDRFTREDGIVICATVAFGMGIDKPDVRF
VVHADMPKSMESYYQEVGRAGRDGLPAATLTLYGIDDIKLRRLQIDDSDAPDDRKRADHQ
RLNALLALAEAPNCRRQVLLSFFGERDHGPCGHCDLCKSPVETYDGTQDAQKALSAMIRT
GERFGLEHVIAVLRGEDTERVRTLRHDQLPTFGLGAHYDKHQWRDICRQMYALGLTSVDP
QYGSWLVTEPGWAVLKQGETVALRHPPGPKERRQDRRRSSPKSKTPRKAKPPVDLSERDG
ELLMALKAKRTELARAQNVPAYVIFPDKTLVEMAMARPSSLDEMAEISGVGARKLEKFGA
VFLEVVGQH
NT seq
1830 nt
NT seq
+upstream
nt +downstream
nt
atggctgatgcccgtgcgctcctcaaaaccgtattcggctttgacgattttcgtccggga
caggaggacattgtcgcgtccattcttggcggtcaggacgtgctggccatcatgccgacg
ggggctggcaagtcgctgtgctatcaactccccgccttgatgcgcgacgggctgacggtt
gtcgtgtcgccgctcattgcgctgatgcgcgatcaggtggccgcccttcaggccaatggc
gtggaagcaggcgcgctgacctccaacacggacccgtatgaagccgagcgcattcatcag
gcgattgatgatggcgtgctcaagctcttgttcatggcgcccgaacgcctgtcgattgcc
agcggattgctgcagcgggcgggcgtgtcgatgctggccatcgacgaagcgcactgtgtg
agccaatggggtcatgacttccggccggactatctcaagatcggcgcgctgcgtgatcaa
ctcagtgcccagcttggccacatccagatcacggcctttacggccaccgctgacgaagag
acgcgcggggagattgctgccaagctcttcacgcaggagccggacgtgtttctgggcggc
tttgatcggccgaacctgtttctggcgtttgagcccaaggcgcagccaaagacgcaggtg
gcggatttcgtcgcgcagcatcccggcgaagcaggcattgtctattgctcgtcgcgcgcc
aagacggaaagctttgcagagcacctgcagtccaaaggcgtagaggcgctggcctatcac
gccgggctggacggcgagacgcgtcagataagacaggaccggtttacccgggaagatggc
atcgtcatctgcgccactgtcgctttcggcatgggcatcgacaaaccggacgtccgcttt
gtggtgcatgcggatatgcccaagagcatggaaagctattatcaggaagtgggccgcgcg
ggccgcgatggcctgcctgccgcgacgctgacgctgtacggaattgacgacatcaagctg
cggcgtttgcagattgacgacagtgacgcgccggacgacagaaagcgcgctgaccatcaa
cggctgaatgcgttgctggcgctggcggaagcgccaaactgtcgccgacaggtgctgttg
tcgttctttggcgagcgcgaccatggcccctgcggccattgcgatttgtgcaagtcgcca
gtcgagacttacgatggcacgcaggacgcgcaaaaggcgctgtccgccatgatccgtacc
ggcgagcggtttggccttgagcatgtgattgccgtgctgcgcggcgaagacaccgagcgc
gtgcgcacgctgcgtcacgatcagctgccgaccttcgggctgggtgcgcactatgacaag
catcaatggcgcgacatctgccgccagatgtatgcgctggggctgacgtcggttgatccg
caatatggctcgtggctggtgacggaacccggctgggccgtgctgaaacagggcgagacc
gtggccctgcggcatccgcctggcccaaaagagagaaggcaggaccgtcgccgcagcagc
ccgaagagcaaaacgccgcgcaaggccaaaccgccggtcgatctctcagaacgcgatgga
gaattgctgatggccctcaaggccaagcgcacggaactggccagggcgcagaacgtcccc
gcctacgtcatcttccccgacaagacgctggtggaaatggccatggcccgcccaagctcg
ctggacgaaatggccgagatcagcggcgtcggcgcgcgcaagctcgagaagttcggggcg
gtgtttttggaagtggttggtcagcattag
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