Candidatus Phaeomarinibacter ectocarpi: BN1012_Phect2702
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Entry
BN1012_Phect2702 CDS
T09856
Name
(GenBank) Cytoplasmic axial filament protein CafA and Ribonuclease G
KO
K08300
ribonuclease E [EC:
3.1.26.12
]
Organism
pect
Candidatus Phaeomarinibacter ectocarpi
Pathway
pect03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pect00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
BN1012_Phect2702
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pect03019
]
BN1012_Phect2702
03009 Ribosome biogenesis [BR:
pect03009
]
BN1012_Phect2702
Enzymes [BR:
pect01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.26 Endoribonucleases producing 5'-phosphomonoesters
3.1.26.12 ribonuclease E
BN1012_Phect2702
Messenger RNA biogenesis [BR:
pect03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
BN1012_Phect2702
Ribosome biogenesis [BR:
pect03009
]
Prokaryotic type
rRNA processing factors
BN1012_Phect2702
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_E_G
RNase_E_G_Thio
S1
DnaJ_CXXCXGXG
DUF5351
Motif
Other DBs
NCBI-ProteinID:
CDO60915
UniProt:
X5MN19
LinkDB
All DBs
Position
complement(1156572..1159400)
Genome browser
AA seq
942 aa
AA seq
DB search
MGKKMLIDAAHREETRVAIVSGNRVENFDFESEAKRPLRGNIYLAKVTRVEPSLQAAFIE
YGGNRHGFLAFSEIHPDYYQIPVADREKLLAEEAAEEFDEDDDNYDEDDDSDADAASDES
DDAYDIGAHAFEADDESGDGNDDASDDEAATPAIAAEAASTESISEDVSDDEDAIDDDGD
LPETNIEEINDEDSAEEVTSSDDDDDIDSSDDDDEGDDQSDEDSEASSDDDETVTASGDD
DEKKSDNRGRGRGRGRNGNRNGGRGSSRGRNGRSGDRRPSRRSRSRHYKIQEVIKRRQIM
LVQVVKEERGNKGAALTTYLSLAGRYCVLMPNTARGGGISRKITNTSDRRRLKEAMNEMD
VATGMGLIVRTAGANRTKVEIKRDFDYLLRLWENIRDLTLKSSAPCLIYEEGDLIKRSIR
DQYSKDIDEIIVDGDKAYKEAKDFMRMLMPSHAKNVKRYKDSEPLLQRHGVQSELDALLE
PTVTLKSGGYIVINPTEALVSIDVNSGKSTKEHNIEATAVSTNLEAAEEIARQLRLRDMA
GLVVIDFIDMDEPRNNRAVERKLKDSLKQDRARIQVGRISSFGLLEMSRQRMRSGVLEGS
TDTCPHCQGTGMIRSTESAALQVLRAVEAEALKGRAKALDVNVPMDIAVFILNQKRTTLL
DIERRGRVSVYMVADASLISPDYSIKRTDDRTPDVSMDTDALSMESAFDDEEDAALDAKA
EAAARSEEEADASANTENSSGEDADGDGEDKPKRRRRRRRGRKSESGSAENNAAEDGDTS
EAAATEASGSEDGDGETPELDEDGKPRKRRRRGRRGGRRHRRTADADDEGNSEGTNGDVE
TTAKASDSDVDTNNSTSDGDEEAPVLVAYSTSASEPMVVDQSQTPAESTTSPASETDNEA
EQAVADTAAASAASTKASVEVETSETPAEPTKRGWWQRRLSS
NT seq
2829 nt
NT seq
+upstream
nt +downstream
nt
atgggcaagaaaatgctgatagacgcggcccaccgggaagaaacccgcgtggccatcgtc
tcgggaaaccgtgtcgagaacttcgactttgaatccgaggccaaacgtcccttaaggggc
aatatctatctcgctaaagttacacgcgttgaaccgtcgctgcaggctgccttcattgag
tatggcggcaacaggcacggctttcttgcgttcagcgaaatccatcctgactactatcaa
attcctgtcgcggaccgcgaaaagttgctggctgaagaagccgcagaggaatttgacgag
gatgatgacaattacgatgaagatgacgacagcgacgccgacgctgcctcagacgagagc
gatgatgcctatgacatcggcgctcatgcgtttgaagcagatgatgagagcggagacggc
aatgacgacgcctctgacgatgaggctgctacgcctgcgatagcagctgaggccgcatcg
accgagtccatcagcgaagatgtgtccgatgatgaagacgccattgacgatgatggcgat
ctgccagagaccaacatcgaagagatcaacgacgaagacagcgctgaagaagttacatcc
tcagacgatgacgacgacatcgactcaagcgatgatgatgacgaaggcgacgaccagagc
gacgaagactctgaagcgtccagcgatgacgatgagacagttacagcctctggcgatgat
gacgaaaagaagtctgacaatcgcggtcgtggacgcgggcgtggccgcaacggaaaccgg
aatggcggtcgcggctcctcgcgcggtcgcaacggccgaagcggcgatcgtcgtccaagc
cgccgcagccgctcgcgtcactacaaaattcaggaagtcataaagcgccgccagatcatg
ctggttcaggtcgtgaaagaagagcgcggcaacaagggcgctgctctcacaacctatttg
tcactcgccggccgctattgcgtcctgatgccgaacactgcgcgcggtggcggcatctca
cggaaaattacaaacacgtccgatcgtcggcgcctcaaagaagcaatgaatgagatggac
gtggcaaccggcatgggccttatcgtccgcaccgccggggcaaatcgcacaaaggtcgag
atcaagcgtgatttcgactacctgctgcgtctgtgggagaacattcgggacctgacgctc
aagtcttctgcgccctgcctgatttacgaagaaggcgatctgatcaagcggtccatccgc
gaccagtattccaaggacatcgacgagatcattgttgatggcgacaaggcgtacaaggaa
gccaaggatttcatgcgcatgctcatgccgagccatgcgaagaacgtgaaacgctacaag
gatagcgagccgctgttgcagcgccacggtgtgcaaagcgagcttgacgctctgcttgag
ccgaccgttacgcttaaatcaggtggctatatcgtcatcaatccaacggaagcgcttgtt
tctattgatgtgaactccggcaaatccaccaaagaacacaatatcgaggcgactgcagtt
tccacgaacctggaagccgctgaagagattgctcgccagctccggcttcgtgatatggcc
ggccttgtcgtcattgacttcatcgatatggatgagccgcgcaacaatcgcgccgttgaa
cgcaaacttaaagacagcctgaagcaggatcgcgcccgcatccaggtcggtcgaatttca
tcattcggccttcttgaaatgtcgcgccagcgcatgcgctccggcgtattggaggggtcg
actgacacctgcccacactgtcagggaacaggcatgatccggtcgacggaatctgctgcc
cttcaggtattgcgtgcggtcgaggctgaagcgctcaagggtcgggcaaaggcactcgat
gtgaatgtcccgatggacattgcggtgttcattctcaatcagaaacgcaccactttgctg
gacatagaacgtcgcggtcgtgtctcggtttacatggttgcggacgcctccttgatctct
cctgattattccatcaagcgtactgacgaccgcacgccagatgtgtccatggacactgat
gcattgagcatggaaagcgcattcgacgacgaggaagacgcagcgctggatgccaaggct
gaagctgccgctcgcagcgaagaagaagctgatgcatcagccaataccgagaacagcagt
ggcgaagatgcggatggggatggagaagacaaacccaagcggcggcggcgcaggcgtcgt
ggtcgcaagtcagaatctggttccgcagaaaacaacgctgccgaagatggcgacacttct
gaggccgcagcaacagaagcatctggttctgaagatggtgacggcgagacgcctgaactt
gatgaagatggcaagccgcgcaagcgccgccgccgtggtcgccgaggtggcaggcgccat
cgcaggacagctgatgcggatgatgaaggcaattcagaaggaaccaacggtgacgttgag
acgacagccaaagcatctgattctgacgttgacaccaacaactccacgtccgatggcgat
gaggaagcgccagtattggtagcctactcgacaagcgcgtcagagccgatggtcgtggat
cagtcgcagacaccagctgagtccaccaccagtcctgccagcgagactgacaatgaagca
gagcaggctgttgcagatacagcagcagcgtctgccgcttcaacaaaagcatcggtggaa
gtggaaacgtcggaaacacctgctgaaccaaccaagcgtgggtggtggcagcgccggctc
tccagctag
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