Candidatus Phaeomarinibacter ectocarpi: BN1012_Phect2780
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Entry
BN1012_Phect2780 CDS
T09856
Name
(GenBank) DNA polymerase III alpha subunit
KO
K02337
DNA polymerase III subunit alpha [EC:
2.7.7.7
]
Organism
pect
Candidatus Phaeomarinibacter ectocarpi
Pathway
pect03030
DNA replication
pect03430
Mismatch repair
pect03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
pect00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
BN1012_Phect2780
03430 Mismatch repair
BN1012_Phect2780
03440 Homologous recombination
BN1012_Phect2780
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
pect03032
]
BN1012_Phect2780
03400 DNA repair and recombination proteins [BR:
pect03400
]
BN1012_Phect2780
Enzymes [BR:
pect01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
BN1012_Phect2780
DNA replication proteins [BR:
pect03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
DNA polymerase III holoenzyme
BN1012_Phect2780
DNA repair and recombination proteins [BR:
pect03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA polymerase III holoenzyme
BN1012_Phect2780
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol3_alpha
DNA_pol3_finger
PHP
HHH_6
tRNA_anti-codon
DUF655
Motif
Other DBs
NCBI-ProteinID:
CDO60993
UniProt:
X5MAN8
LinkDB
All DBs
Position
1246996..1250478
Genome browser
AA seq
1160 aa
AA seq
DB search
MAMSDESSLGATPDEIREFKDPVFVHLRLHTAYSLLEGAVRVPDLPGRCQSMDMPAVAIT
DTGNLFGALEFSEKLSGAGVQPIIGCTLALDLEVEPVRGGGVRPPDPTIALLAKDEVGYL
NLMALTSEAYLGTDGTEQPHISLEELAGHAEGLICLTGGPNGPINRLIVSGQSDPATKLA
QTLAKSFPQRLYVELQRHGMAEEAAAEPLLLDIAYDQNLPLVATNEVFFFEADDYEAHDA
LLCVADGAYVMQEDRRRMTPDHRFKSGAEMAALFADLPEAIASTVEIAQRCAYRPRIIDP
ILPRFEGLDGVEGESAELKRQAEEGLRARLEALGTFAPEEDYWKRLEFELSVIQNMGFPG
YFLIVADFIKWAKQHDIPVGPGRGSGAGSVVAWALTITDLDPLRFGLLFERFLNPERISM
PDFDIDFCQDRRDEVISYVQEKYGRDRVAQIITFGKLQARAVLRDVGRVLQMPYGQVDRL
CKLVPNNPANPVTLGEAIKGEPKLQEARRSEEIVDRLISMSLKLEGLYRHASTHAAGVVI
GDRPLQELVPLYRDPRSDMPVTQFNMKWVEPAGLVKFDFLGLKTLTVIERALKLLKNRGV
DVNIEALPLDDVGTYEMLSRGETVGVFQLESSGMRDILRKMKPDRFEDIIALVALYRPGP
MDNIPKYLAVKKGDEEPDYLHPSLEPILTETYGIMIYQEQVMQIAQVLSGYSLGDADLLR
RAMGKKIQAEMDKQKVRFVEGAEANKVDGKQAAGIFEQVNKFAGYGFNKSHAAAYALVAY
QTAWLKANYPVEFLAASMNLDMGNTDKLNTFRREAQRLEIEVYTPNINQSGAEFTVIDGA
ISYALAAVRNVGKQAMHHLAEERKSNGPFKSVADFASRVSPKHVNKRAIENLACAGAFDG
VDKNRARLHGAADKVMAEMSRADAERESSQSSLFGDGPGVAPDLRLGDQRDWMPMERLRH
EMEAVGFYLSGHPLDDYRDALRRARVKPYAEFVQAIASGGPRVGKLAGTVAYKQERRSKS
GNSFAFMGLSDGTGEFEAVIFSDALAMSRDFLEPNMSVVVGVEAEVDGDDVRLKIATVQP
VDKVASETSNGLRLFVDDPKALTSIQACLPPKGRGQLSLIVDAEGGKKEVEITLPGRFEV
TPQARGALKAIDGVAHVEDL
NT seq
3483 nt
NT seq
+upstream
nt +downstream
nt
ttggccatgagtgacgaatcgagcctaggcgcaacgccggacgagatcagggaattcaaa
gatcctgtcttcgtccatctgagacttcatacggcttattcccttctggaaggtgccgtg
cgggtgccggatttgcccggtcgttgtcagtcaatggatatgccagcggtggccattacc
gataccggcaatctgtttggcgctcttgaattttctgaaaaactctctggtgcaggcgtc
cagcccataattgggtgtaccctcgcattggacctagaggttgagcctgtgagaggcgga
ggtgtccgtcctcccgacccaacaatcgcgctccttgcaaaggacgaagtcggttacctc
aatttgatggcccttacctcagaggcctatctgggaaccgacggcaccgagcagccgcac
atctcacttgaagagttggccggccatgccgaagggcttatctgtctcaccggtggaccg
aatggcccgataaatcgcctcatcgtttccgggcaatcagacccggcaacaaagcttgcg
cagacactggccaagtcgtttccccagcggctctatgttgagctccagcggcacggtatg
gctgaggaggccgcggctgagcccctgcttctggatattgcctatgaccagaatttgcct
ctggttgccaccaacgaagtcttcttctttgaagctgatgattacgaagcccacgatgca
cttttgtgtgtcgcagacggcgcttatgtgatgcaggaagaccgccgtcgtatgacgccg
gatcaccggttcaagtcaggcgcggaaatggcggcgctttttgccgatctgcctgaagca
atcgcatcaacggtcgagatcgcccagcggtgtgcgtatcgccctcgcatcattgatcca
atccttccacgatttgaagggttggacggcgtcgaaggtgaatcagccgagctcaaacgt
caggctgaggaggggttgcgcgcccggctagaggcactgggaaccttcgcgccggaggaa
gactactggaagcggcttgagtttgagctcagcgttatccagaatatgggattccccggc
tattttctgatcgttgccgactttatcaagtgggcaaagcagcatgacatcccggttggc
ccgggccgcggttccggtgcggggtcagtggtcgcctgggcactcaccatcacagacctt
gacccgttgcggtttggtctgctgttcgaacggttcttgaaccccgaacgcatatcaatg
cccgactttgatatcgatttctgccaggaccgtcgcgatgaagtgatctcctatgtacag
gagaaatacgggcgcgatcgcgtagcccagatcatcacattcggtaagttgcaggcccgt
gctgtgttacgtgacgttgggcgcgtcttgcagatgccctacggccaggttgaccgcctg
tgcaagctcgtgccgaataatcctgcgaatccggtgaccctcggagaagccattaagggc
gaaccaaagctgcaggaagcgcggcggtctgaggaaattgtcgaccggctgatcagcatg
tctttgaagctggaaggtctgtaccgccacgcgtccacccacgcagccggcgtggtgatt
ggcgaccgtccgctgcaggagctggtgcctctctatcgcgatccgcgttcagacatgccg
gtgactcaattcaacatgaaatgggtagagccggcggggctcgtcaaatttgacttcctt
ggcctgaagaccctcaccgtcattgagcgcgcgctgaagctgctgaagaatcgcggcgtt
gacgtcaacatcgaggcattgccgcttgatgatgtcgggacctacgagatgctgtcgcgc
ggtgagactgtgggcgtgttccagcttgaaagttcaggcatgcgcgacatcctgcgcaaa
atgaagcctgacaggtttgaggacatcattgcccttgtggcgctctatcgtcccggcccg
atggacaacatccccaagtacctcgctgtgaagaagggcgatgaagaaccagactatctg
catccaagtcttgagccgatcctgaccgaaacctacggcatcatgatctatcaggagcag
gtgatgcagattgcccaggtcctgtccggctattcactcggtgacgctgatttgttgcgc
cgtgccatgggcaagaagatccaggccgaaatggacaagcagaaggttcgctttgttgag
ggcgcggaagcaaacaaggtggatggcaagcaggctgctggaatttttgagcaggttaac
aagttcgctggatacggcttcaacaagagtcatgcagctgcctatgcactggtcgcgtat
caaaccgcctggctcaaggccaactatcctgtggagttcctggcggcatcaatgaacctt
gatatggggaatacggacaaactcaatacgttccggcgcgaggcgcagcgattggagatt
gaggtctacacgccaaacataaatcagtccggcgcagaatttacggtgattgacggcgcc
atttcttatgcacttgcggcagttcgcaatgtaggaaagcaggccatgcatcacctggcg
gaggagcgaaaatcgaacggcccgttcaaatcagttgcagactttgcctctcgcgtatcg
ccgaaacatgtgaacaaacgcgctattgaaaatctcgcatgcgcgggcgcattcgacggt
gtggacaaaaatcgcgcacgactgcatggggcggccgataaggtcatggctgagatgagc
cgtgctgacgcagagcgcgaaagttcacaatcaagtctgtttggtgatgggccgggtgtc
gcccctgatctgcgactgggagaccagcgcgattggatgcccatggagcggttgcgtcat
gaaatggaggccgtcggcttctatttgtcgggccacccgctggacgattatcgggatgcc
ttgcggcgcgcccgcgtcaagccctatgcggaatttgtgcaggctattgcatccgggggg
ccacgtgtcggcaaactcgccggcactgtggcctacaagcaggagcgtcgctccaagagc
ggcaacagttttgcatttatgggtctgtcagacggcacaggcgaatttgaggcggtgata
ttttcagatgcactggcgatgtcacgtgactttcttgaacccaacatgtctgtggtcgtg
ggggtcgaggcagaggtggacggagatgatgttcggctcaagattgcgactgttcagcca
gtggacaaggtagcgtcagagacctccaacggcttgcgcctgtttgtggatgacccaaaa
gccctcaccagcattcaggcttgtttgccaccaaagggcagggggcagttaagtctcatc
gtcgatgccgaaggcggtaagaaggaagtggaaatcactttgcccgggcgctttgaagta
acccctcaggcacgcggtgcactcaaggcgattgacggcgtcgcgcacgtagaggatctg
taa
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