Candidatus Phaeomarinibacter ectocarpi: BN1012_Phect2897
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Entry
BN1012_Phect2897 CDS
T09856
Name
(GenBank) ATP-dependent RNA helicase RhlE
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
pect
Candidatus Phaeomarinibacter ectocarpi
Pathway
pect03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pect00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
BN1012_Phect2897
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pect03019
]
BN1012_Phect2897
Enzymes [BR:
pect01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
BN1012_Phect2897
Messenger RNA biogenesis [BR:
pect03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
BN1012_Phect2897
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
BALF1
Motif
Other DBs
NCBI-ProteinID:
CDO61109
UniProt:
X5MHD5
LinkDB
All DBs
Position
1363332..1364648
Genome browser
AA seq
438 aa
AA seq
DB search
MTDFTSLGLAEPILRAISDEGYTTPTPIQAKVIPSMMDGSDILGIAQTGTGKTAAFVLPI
LHALCGDPMPAKHRTCKALILAPTRELAAQIGDNIRAYGKHSRPSVAVIVGGAKIPPQIK
ALAKGVDIVVATPGRLLDHVASKNLRLDTTTKVVLDEADQMFDLGFMPQIKRIMGYLPKK
RQTMLLSATMPKQVRALAQVFLHNPIEVTVTPNSKPIDRIDQKVVMLKTADKRAALVDYL
ATPDMERAIVFTRTKRGADKVCKHLEMYGFASAAIHGNKSQNQRVRSLDAFRKGKVNVLV
ATDIAARGIDVDDVSHVVNFELPNVAEAYVHRVGRTARAGKSGQAIALCDGAERGLLRDI
ERLIKRKIDVVDRPADSGLKVVPEEERQVLQQPEPAQRKPRRRKPVGKRNEGGGKNSSGR
PPQRNRRNRKPSAKAKAA
NT seq
1317 nt
NT seq
+upstream
nt +downstream
nt
gtgacagattttacatcgctcggtctcgccgagccgatccttcgtgccatttccgacgaa
ggctacacgacccctacccccattcaggccaaggtcatcccatccatgatggatggatca
gacattctcggcatcgcgcagaccggcaccggcaagaccgctgcgttcgttctgcccatc
ctccacgccctgtgtggcgatccgatgcccgcaaaacaccgcacctgcaaagcactgatc
cttgcgccaacgcgcgagttggcagcacagatcggcgacaacattcgtgcctatggcaag
cattctcgaccttcagtcgctgtgattgtcggtggcgcaaaaattccgccgcagatcaaa
gctttggcaaagggcgtagacattgtggtggcgacgcctggccgtcttcttgaccacgtg
gcctccaagaaccttcgcctcgatacgacaaccaaggttgtgctcgacgaagcggatcaa
atgttcgacctgggcttcatgccgcagatcaagcgcatcatgggctacctgccgaagaag
cggcagaccatgctgctgtcagccaccatgcccaaacaggtccgtgcgttggcgcaggtg
tttttgcacaaccccatcgaagtgacggtgacacccaattccaagccgattgatcgcatt
gaccagaaagtggtcatgctcaagacggcggacaagcgcgccgcgctcgttgactatctg
gcaacgccggacatggaacgggccattgtcttcacccggacaaagcgtggcgcggacaag
gtgtgcaagcatcttgagatgtatggtttcgcctctgctgccattcacggcaacaagagc
cagaaccagcgcgtacgcagtctcgatgcattccgcaaaggcaaggtgaatgtactggtt
gcaacggacattgccgcccgcggcattgacgtggatgacgtttcgcacgtcgtgaatttc
gagctgcccaacgtggctgaggcctatgtgcaccgcgttggccgaacggcccgtgccggc
aagagcggacaggcgattgcattgtgcgatggtgctgaacgcggtcttctgcgtgacatc
gagcggctgatcaagcgcaagattgatgtggtagatcgccccgcagacagtgggctcaaa
gttgtgccggaagaagaacgccaggtgctgcaacagcccgaacctgctcagcgtaaacca
cgtcgtcgcaagccggtcggcaagcgaaatgaaggtggcggcaagaacagttccggtcgt
ccgccacagcgcaatcgccgcaaccgcaagccatcagccaaggcgaaagccgcctag
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