Candidatus Phaeomarinobacter ectocarpi: BN1012_Phect3089
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Entry
BN1012_Phect3089 CDS
T09856
Name
(GenBank) Single-stranded-DNA-specific exonuclease RecJ
KO
K07462
single-stranded-DNA-specific exonuclease [EC:3.1.-.-]
Organism
pect
Candidatus Phaeomarinobacter ectocarpi
Pathway
pect03410
Base excision repair
pect03430
Mismatch repair
pect03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
pect00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
BN1012_Phect3089
03430 Mismatch repair
BN1012_Phect3089
03440 Homologous recombination
BN1012_Phect3089
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
pect03400
]
BN1012_Phect3089
DNA repair and recombination proteins [BR:
pect03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
RecJ
BN1012_Phect3089
DSBR (double strand breaks repair)
HR (homologous recombination)
RecFOR pathway proteins
BN1012_Phect3089
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
BN1012_Phect3089
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DHH
RecJ_OB
DHHA1
Motif
Other DBs
NCBI-ProteinID:
CDO61301
UniProt:
X5MPC6
LinkDB
All DBs
Position
complement(1557081..1558802)
Genome browser
AA seq
573 aa
AA seq
DB search
MRPADERVAETISQALSLDAFLARILAARGVTPETAPTYLAPTLRELLPDPSTMVDMDAA
ASRLADAIVNEEQVAVFGDYDVDGATSSALLERYLTALGVKPRIYIPDRIKEGYGPNPIA
MRLLAEEGAHVCITVDCGTMAHTALEEAKSAGLDVLVIDHHKASPQLPPAWAVVNPNRLD
CPSGLGQLAAVGVAFMLAVATNRALRQRGFFADSRPEPKLTQWLDLVALGTVCDVVPLKG
VNRAFVTQGLKVMGQRGNAGLMALGAVSKMEGAPSPYHAGFMLGPRVNAGGRIGASGLGA
KLLASNDPAEAAQIAERLDILNAERRAIEADVLEHAMGIVERDNLADRPVGIVAGEGWHP
GVIGIVAARIKERTNRPAIVIALDENGLGKGSGRSIAGVDLGAAVVRALESDLLVNGGGH
AMAAGLTVAANKVPELSAFLEKDLAKSVDQAQASMGLTLDGAISCGGATASLVDMIAQAG
PYGSGNPEPRIAISDARVAFADVVGSGHVRVTLKGSSGKNLKAVAFRSADQPLGQALLGA
SDERIHAAGRLKRDSWRGGNAVELHIEDAAPAT
NT seq
1722 nt
NT seq
+upstream
nt +downstream
nt
ttgcgtcctgctgatgaacgggttgcggagacaatctcgcaggccctgagcctcgacgcg
tttctggcgcgcattcttgcagcccgtggcgtcactccggaaaccgctcccacgtatctt
gcgcccaccttgcgtgagttgctgcctgatccctccaccatggtggacatggatgcagca
gcctcacgtctggcagacgccatcgtcaatgaagagcaggtcgcggtctttggggattat
gacgtagacggagcaacctcaagtgctttgcttgagcgctatctgaccgctcttggcgtc
aagccccgcatctacattccagaccgcatcaaagagggctacggccccaacccgatcgcc
atgcgactgttggcggaagagggtgcgcacgtctgcatcaccgttgattgcggcacgatg
gcccatacagcgcttgaagaagcaaagtcggccgggctcgatgttctggtgatcgaccat
cacaaggcgagcccgcaactgccgccggcttgggcggtcgtcaatcccaaccgccttgat
tgtccttcaggactggggcaactcgcagctgttggcgtggccttcatgcttgcggtggcc
accaaccgggcgctgcgccagcgtggcttctttgcggacagccgtcccgagccgaaactg
acccaatggctggatctggtggcgcttggcaccgtgtgtgacgtggtgcctcttaagggc
gtcaacagagcttttgtgacccagggcctcaaagtcatgggccagcggggcaatgcgggt
cttatggcccttggcgctgtttccaagatggagggcgcgccgtcgccctatcacgcgggc
ttcatgctgggaccgcgggtgaatgcggggggccggattggagcatctggattgggtgcc
aagctcttggccagcaatgacccggccgaagctgcacagattgccgaacgtctggatatt
ctgaatgcggaacgtcgggctatcgaggctgatgtgctcgagcacgccatgggcattgtc
gagcgcgacaacctggcagaccgtccggtgggcattgttgccggtgaagggtggcatcct
ggtgtcatcggcattgtcgctgcccgcatcaaggaacgcacgaaccgaccggcgattgtg
attgcgctggacgagaatggactgggcaaaggttcaggccgctccatcgccggtgttgat
ctgggcgccgctgtggtgcgggcgctggaaagcgacctgctggtcaatggtggcggccat
gccatggctgccggcctgacggttgcggccaataaagtcccggaattgagcgcctttttg
gagaaagacctggccaagagtgttgatcaggctcaggcgagcatgggactgacgctggat
ggtgcgatttcatgtggcggggccacggcgtcgcttgtcgacatgattgcccaggccggc
ccctatgggtcaggcaacccggaaccccgcattgccatatcagacgcccgtgtggccttc
gctgatgttgtcggcagtggccacgtccgcgtcactctcaagggctccagcggcaagaat
ctcaaggcggtggcattcaggagtgccgatcagcctcttgggcaggcgctgctgggggca
tctgacgagcgaattcatgcggccgggcggctcaaacgggacagctggcggggtggaaac
gctgtggagttgcatattgaggatgcggcaccggccacttag
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