Candidatus Phaeomarinibacter ectocarpi: BN1012_Phect3218
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Entry
BN1012_Phect3218 CDS
T09856
Name
(GenBank) 3'-to-5' exoribonuclease RNase R
KO
K12573
ribonuclease R [EC:
3.1.13.1
]
Organism
pect
Candidatus Phaeomarinibacter ectocarpi
Pathway
pect03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pect00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
BN1012_Phect3218
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pect03019
]
BN1012_Phect3218
03016 Transfer RNA biogenesis [BR:
pect03016
]
BN1012_Phect3218
Enzymes [BR:
pect01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.1 exoribonuclease II
BN1012_Phect3218
Messenger RNA biogenesis [BR:
pect03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
BN1012_Phect3218
Transfer RNA biogenesis [BR:
pect03016
]
Prokaryotic type
tRNA degradation factors
BN1012_Phect3218
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNB
S1
CSD2
Motif
Other DBs
NCBI-ProteinID:
CDO61430
UniProt:
X5MNM7
LinkDB
All DBs
Position
1683980..1686370
Genome browser
AA seq
796 aa
AA seq
DB search
MAKKPNSPRPRKKPAKRGKAKAASANFLPTKDQVLEFMATYQGTPGKREIARAFRIQGPQ
RVALKGLLRQMEEEGLLEKASNKKFTRVGELPPVGVIDIVDRDTDGELTAKPANWTAETE
PPTIVLAPSGHKDPGSFGIGDRVLARLNKATEDFDYEARVIKKLGDGAKTIIGVLRSGPG
KDWTLEPVDKRERNDYRIASSDVADAKPEELVEAEVLSGRQYGPRAAKVIKSLGPLEGTH
AISLIAVHEQGIPIDFDPAALAEAQAAKPANARGRTDLRDIPLITIDPADARDHDDAVWA
TPSDDQNNKGGFEVIVAIADVAGYVRPGSALDRDAQKRGNSAYFPDRVIPMLPERISNNL
CSLVEGEDRPCIAVRMVFDKHGNKKNHEFMRAIMRSAAKLSYQQAQQAYDGLTSDVESDV
PDALTQNVIVPLYNAYEAITRAQEKRAPLALDLPERKIEMGPDGHIAQIREVERLDSMRL
IEAFMIAANVCAAETLESKKAPVVYRIHDAPSPEKLTALAEFLQTLDMSIPRGAVIKPGH
LNRILASAADTETSDMVSEVVLRSMAQAEYNPENLGHFGLNLQRYAHFTSPIRRYADLLV
HRSLIRALGLTPNVEKDGLTDEEEKTLAQIAEHISSTERRAMAAERASKDRYLAQFLSNR
VGAEFEGRISGVTRFGLFVRLNETGADGLVLISSLNGDYYHHSESLHALIGERTGMMFRL
GDDVTVRLEEVAPLKGGMRFEMIAGGRKAAPAEQKHARKDRQNARAEAGGRHGRSNPSRR
PKLPRSGKKKSSSRRK
NT seq
2391 nt
NT seq
+upstream
nt +downstream
nt
gtggcaaaaaaacccaatagccctcgcccccggaaaaaacctgcaaaacgcggcaaagct
aaagctgcgtctgcgaattttttaccgaccaaggatcaggtccttgagttcatggcaacc
tatcagggaacgccgggcaaacgtgaaatcgctcgcgccttccgcattcagggccctcag
cgcgtagccctgaaaggcctgctgcggcagatggaagaagaaggccttcttgaaaaagcg
tccaacaagaaattcacccgcgtgggcgaacttccaccggttggcgtcatcgacattgtg
gaccgtgataccgacggcgagctgactgcaaaacctgccaactggaccgccgaaaccgaa
ccgccaaccattgtgctggcgccctccggtcacaaggaccccggcagttttggtatcgga
gaccgggtgctcgcccgcctcaacaaggcgacagaagacttcgactacgaagcccgcgtc
atcaagaaactgggtgatggcgcaaagactatcattggtgtcctgcgctccggccccggc
aaggactggacgctagagcctgtcgacaagcgcgaacgcaatgactaccggatcgcgtca
agtgatgtagcagatgccaaaccagaggaactggtcgaagcagaagtcctgtccgggcgg
caatatggtccaagggcagccaaggtcatcaagtcgcttggccccctcgaaggcacccac
gccataagtctcatcgcggtgcacgaacagggcatccccatcgactttgacccggcagcc
cttgctgaagcccaggctgccaaacctgccaatgcgcgcggacgaaccgacctgcgcgac
atcccgctcatcaccatcgacccggcagacgcgcgcgaccacgacgatgcggtgtgggcc
acacccagcgacgaccagaacaacaagggcggctttgaagtcattgtcgccatcgcagac
gtcgcgggctatgtgcgcccagggtctgctcttgatcgcgacgcgcagaaacgcggcaac
tccgcctactttcctgatcgcgtcatccctatgttgccggagcgcatctcgaacaatctg
tgttccctcgttgagggtgaagaccgcccctgcattgcggttcgcatggtgttcgacaag
cacggcaacaagaagaaccacgagttcatgcgcgccatcatgcgctcggctgccaagctc
tcgtatcaacaggcacagcaggcctatgacggcctgacgtcagatgttgagtccgatgtc
cccgatgcactgacacaaaacgtcattgtgcccctctataacgcctacgaagccatcacc
cgtgcgcaggaaaaacgagcgccactcgctcttgatttgccggaacgcaaaattgaaatg
ggccccgatggccacatcgcacaaattcgcgaagtggagcggctggacagcatgcgcctc
attgaggcgttcatgatcgctgcaaatgtctgcgccgcagaaaccctggagagcaagaag
gcaccggtcgtctatcgcatccacgacgcgccctcgcctgaaaaactgacagcgcttgcc
gagtttctgcaaaccctggatatgtccattccccgtggtgctgtgatcaagcccggccat
ctcaaccgcattcttgcaagcgccgcagataccgaaacatcagacatggtgagcgaggtg
gtcctgcggtccatggcccaggcggaatacaatccggaaaacctgggacacttcgggcta
aaccttcagcgctatgcgcactttacatcacccattcgtcggtatgctgaccttctggtc
caccgatcgctcatacgcgcccttgggctcacaccgaatgtggaaaaggacgggctgacc
gacgaagaagaaaagacccttgctcaaatcgctgaacatatctcgtccactgagcggcgc
gccatggcagcagaacgcgcaagcaaggaccgctatcttgcgcagttcctttcaaaccgg
gttggcgctgagtttgaaggccgcatctccggcgtcacccgctttggtttgtttgttcgc
ctgaacgaaaccggcgcggacggcctggtgctcatctcctcactgaatggcgattactac
catcactccgaaagccttcatgcgctcattggcgagcggaccggcatgatgttcaggctt
ggcgacgacgtgaccgttcgccttgaagaagtagccccgctgaaaggtggcatgcgtttt
gagatgattgccggtggccgcaaggcagccccagctgagcaaaaacatgcgcgcaaggac
cgacagaatgcgcgcgcggaagccggtggacgccacggtcgttcaaatccgtctcgacgc
cccaaattgccccggtccggcaaaaagaaatcgtcgtcccgccgcaagtaa
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