Candidatus Phaeomarinobacter ectocarpi: BN1012_Phect3272
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Entry
BN1012_Phect3272 CDS
T09856
Name
(GenBank) DNA-directed RNA polymerase alpha subunit
KO
K03040
DNA-directed RNA polymerase subunit alpha [EC:
2.7.7.6
]
Organism
pect
Candidatus Phaeomarinobacter ectocarpi
Pathway
pect03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
pect00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
BN1012_Phect3272
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
pect03021
]
BN1012_Phect3272
03400 DNA repair and recombination proteins [BR:
pect03400
]
BN1012_Phect3272
Enzymes [BR:
pect01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
BN1012_Phect3272
Transcription machinery [BR:
pect03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
BN1012_Phect3272
DNA repair and recombination proteins [BR:
pect03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
BN1012_Phect3272
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_A_bac
RNA_pol_L
RNA_pol_A_CTD
RNA_pol_L_2
IDH
Motif
Other DBs
NCBI-ProteinID:
CDO61484
UniProt:
X5MHY8
LinkDB
All DBs
Position
complement(1736805..1737839)
Genome browser
AA seq
344 aa
AA seq
DB search
MNEANKLIQKNWQELIKPNKLDIQPGRDAQRIATVVAEPLERGFGLTLGNALRRVLLSSL
QGAAVTSVQIDGVLHEFSSVAGVREDVTDIVLNIKQMAIRLHSEGPRRMTLKADKAGAVT
AGMIETGADIDILNPDLVLCTLDEDSEIRMEFTVDLGKGYVAADRNRPEDAPIGLIPVDS
LFSPCRKVSYKVENTREGQILDYDKLTLTVETDGSLTPDDAVAYAARILQDQLQTFVNFE
EPRPEQPVEERPELEFNPALLKKVDELELSVRSANCLKNDNIVYIGDLIQKTEAEMLRTP
NFGRKSLNEIKEVLAQMGLHLGMEVPNWPPENIEDLAKRYEDQY
NT seq
1035 nt
NT seq
+upstream
nt +downstream
nt
atgaacgaggctaacaaattgatccagaagaactggcaagaactgattaagcccaacaag
ctggacattcagccgggccgtgatgcccagcggatcgcaacggtcgttgcagaaccgctt
gagcgcggctttggcctgacgctcggcaacgcattgcgccgtgttctgctgtcatcgctg
cagggcgctgcggtgacgtctgttcagattgacggcgtgctgcacgagttttcttctgtt
gctggtgtgcgtgaggatgtcaccgacattgtcctcaacatcaagcagatggcgatccgc
ctgcattctgaaggcccacgtcgcatgacgctcaaggctgacaaggccggggcggtgact
gcgggcatgatcgagacgggtgcggatatcgacatcctcaatcctgatctcgtgctgtgc
acgctcgatgaagactctgaaatccgcatggaattcacagttgatctcggcaagggctac
gttgcggcggatcgcaaccgtcccgaagatgcgccgattggcctgatcccggtggacagc
cttttcagcccgtgccgcaaggtgtcctacaaggttgagaatacccgtgagggacagatt
ctcgactatgacaagctcacgctcacagttgaaaccgatggctcactgacgccggatgat
gcggttgcttatgcagcccgtattcttcaggaccagctgcagaccttcgtgaacttcgaa
gagcctcgcccggaacagcctgttgaagagcgtcccgagctggagttcaacccggcactg
ctgaagaaggtagatgagcttgagctctctgtccgttcagccaactgcctgaagaacgac
aacatcgtctacattggcgaccttattcagaagacagaagcggaaatgctccgtacgccg
aacttcggccgtaagtcgctgaatgaaatcaaagaagtgcttgcccagatgggtctccac
ctcggtatggaagtgccgaattggccaccggagaacatcgaagacctggctaagcgttac
gaggatcagtactag
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