Peptoniphilus sp. ING2-D1G: ING2D1G_1077
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Entry
ING2D1G_1077 CDS
T03807
Symbol
mfd
Name
(GenBank) Transcription-repair-coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
ped
Peptoniphilus sp. ING2-D1G
Pathway
ped03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
ped00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
ING2D1G_1077 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
ped03400
]
ING2D1G_1077 (mfd)
Enzymes [BR:
ped01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
ING2D1G_1077 (mfd)
DNA repair and recombination proteins [BR:
ped03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
ING2D1G_1077 (mfd)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TRCF
UvrB_inter
DEAD
CarD_TRCF_RID
Helicase_C
ResIII
UB2H
RecG_dom3_C
Motif
Other DBs
NCBI-ProteinID:
CDZ75217
UniProt:
A0A090HYA7
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All DBs
Position
I:complement(1047820..1051293)
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AA seq
1157 aa
AA seq
DB search
MNFLTDFLKNYKDFNELIKYIDDKKTPIAVYGAAEGQISHIVYSLWKYGKEPVIIIAKDE
LKARKIYDDLKSLNLSEVSLYTDRNILLYDRYFKSLDNMKIRLKSIYDVMKNNSNIVVTT
LNAIGDKISSRDIFSKHILEFKVGEEISLQDVSKKLIDMGYERTSQVESFAQFAIRGYIL
DVYTAQGAFRIELFDTEIDSIRNFNINTQRSIENLNEVEVIPANDLILEDKDRVFVADEL
SLALNNSKSTEDEKLQKKFNKYIEDLKSGKYIQNMDLLIPFMKQESLSSILEYLNKNTVV
ILEESNDSVENYSEKEIEFKDNLTDLIIQGEALKEHENIKYQRQEIISKLKYKNLLLFNS
FTVATKDFSPKAIINLKTRASVRYKGKMKLFIDDLKNYMYRGYKVVIMGGDEERAKKLQA
NLIEEGISSKYSYDFDNSLKSGETVVTVGGLSEGFEIVDLKFVIINYREIYGGTRESKKS
RKKRKALNFEDLKIGDYVVHESHGVGKYVGTKRLEVKGIIKDYVLIEYKGEDKLFLPIEN
LDSIYKYTSQEGKKPKINKLNSAEWNKTKSKAKKSVEDMADDLIKLYAKRMQEEGHAFEK
DTPWQREFEDAFEFEETEGQLRSTEEIKRDMESKKPMDRLLCADVGYGKTEVALRAAFKA
IMDGKQVAFLVPTTVLAKQHYDTIIDRFKDFPVKTSLLSRFRTVREQAEDIKGIKSGVVD
IVVGTHRLLSKEIKFKDLGLLIVDEEQRFGVKDKERLKMIKENVDTLTLTATPIPRTLQM
SMVGIRDMSVIEEPPEERFPVQTYVLEYNDTMVRDAILREMARGGQVYFVYNRVSNMENK
LLELRELIPEATFGIAHGQMQTRILENNMMSFINHEFDVLLCSTIIETGLDMKNVNTMIV
ADSNKLGLSQLYQLRGRIGRSNKIAYAYFTYEPNLSLTEIAQKRLKSIKEFTEFGSGYKI
ALKDLEIRGSGSILGSRQSGHINSVGYDLYIKYLKDALSKLKGEEVNEQADATIDLNIDA
YIPTKYIDDDDLRIEIYKKIASITSDDDYSDLVDELIDRFSDIPKEVSNLMDTALLRHNA
KTAGISSITQKGEIYEIKLNKMIGIEEIKNIQMEFENIEVMVGEEVGFKLSKLTHPFEDL
NKVTKILKLTQKNHKEL
NT seq
3474 nt
NT seq
+upstream
nt +downstream
nt
ttgaattttttaacagattttttaaaaaattacaaagactttaatgaattgattaaatac
atagacgacaagaaaactcctatagctgtatatggtgctgctgaaggacaaatcagtcat
attgtttattccctgtggaaatatggaaaagagcctgtcataattatcgcaaaggatgaa
ttaaaggcaagaaaaatctatgatgatttaaaaagtcttaatttatctgaagtatcgctg
tacacagatagaaacattcttttatatgacagatacttcaagagtttggacaatatgaag
ataaggctcaaatccatatacgatgtgatgaaaaacaattcaaatatagtagtaactacg
ctaaatgcaattggggataagatttcttccagggatatcttttctaaacacatccttgag
tttaaagtgggagaagaaatttctcttcaagatgtatctaaaaaattaatagatatgggg
tatgaaaggacctctcaagttgaaagcttcgctcaatttgccataagaggatatatttta
gatgtatatacagctcaaggagcctttaggattgaactcttcgacacggaaattgattcc
ataagaaacttcaacatcaacactcaaaggtcaatagaaaatttaaatgaagttgaagta
atacccgcaaatgatttaattttagaagataaagaccgagttttcgttgcggatgaatta
tcgcttgcacttaataattccaaaagtactgaagatgaaaaacttcaaaaaaaattcaac
aagtatatagaggatttaaaatctggaaaatacattcaaaacatggacttgttgattcct
tttatgaagcaagagagcttaagctctattcttgaatatttaaataagaacacagtagta
attttggaagagtcaaatgattccgtggaaaattattctgaaaaagaaattgaattcaag
gataatttaacggatctgataattcaaggtgaggcgttaaaggaacacgaaaacatcaaa
tatcaaaggcaagagataatttctaaactaaagtataaaaatcttctcctgttcaattct
tttaccgtagcgactaaagatttttctcctaaagcaataataaacttaaaaaccagagcc
tccgtcagatataaaggcaaaatgaaactctttatagatgatttaaagaattatatgtac
agaggctacaaggtagttataatgggtggagatgaagaacgagctaaaaaactgcaggcc
aatctcattgaagaaggaatttcttcaaagtattcatatgattttgataactctttgaaa
agcggagaaacggtagttacagtgggcgggctttctgaaggctttgagatagtggattta
aaattcgtcatcataaactacagggaaatttacggaggtacaagagaaagcaaaaaaagc
agaaaaaaaagaaaagccttaaattttgaagatttaaaaataggagattatgtagtccat
gaatcccatggagtagggaagtatgtaggcacaaagagacttgaggtaaaaggaataatc
aaggactatgtcttaattgaatacaaaggagaagataaactttttctacctattgaaaat
cttgattcaatctataagtatacttcccaagagggcaaaaagcccaagataaataaatta
aattcagctgagtggaacaagacgaaatcgaaggcaaaaaaaagcgttgaagatatggct
gacgatttgataaaactctacgcaaagagaatgcaagaagaaggacatgccttcgaaaaa
gatacgccgtggcagagggagtttgaagatgcctttgagtttgaagaaacagaaggacaa
ctgaggtctacagaagaaataaaaagggatatggaatctaaaaaacccatggacagactt
ctgtgcgcagatgttggctatggaaagacggaggtagccttaagagctgcttttaaggct
ataatggatgggaaacaagtggcttttttggttccgaccactgtacttgccaaacaacat
tacgatacaataattgacagatttaaagattttcccgtcaagacatctctgctttcgaga
tttagaactgtaagggaacaggctgaagacataaagggaattaaaagcggagtggtggat
atagtagtaggcacacacaggcttctttccaaggaaataaaatttaaggatttgggactt
ttgatagtagatgaagagcaaagatttggggtcaaggacaaggaaagactgaagatgatt
aaagagaatgtagacactttgacactcacggcaacacctattccaagaacgcttcagatg
tccatggtgggaatacgagatatgtcagtcatagaagagccgcctgaagagaggtttcct
gtccagacttatgtgcttgaatacaatgacactatggtaagagatgcaattttaagagaa
atggcaagaggaggtcaagtttattttgtatacaacagagtttcaaatatggagaataaa
cttttagagcttagagaactaattcccgaagcaacctttggaatagctcatggacaaatg
cagacgagaattttagaaaataatatgatgtcctttataaaccatgaattcgatgttctt
ttatgctcaactattattgaaacaggtcttgatatgaagaatgtaaacacaatgatagtt
gcggattctaacaagcttgggctttcacaactttatcaattaagagggagaatcggcagg
tcaaacaaaatagcttatgcttatttcacctatgaaccaaatttaagtttgacagaaatt
gcacaaaaaagacttaaatccataaaagaattcactgaattcggctcaggatataaaatt
gcccttaaggatttggaaattagaggctcaggaagtatactgggctcaaggcaaagtggt
catataaactccgttggttatgacctttacatcaaatatttaaaagatgccttgtcaaag
ttaaagggtgaagaagtaaatgagcaagcagatgcaactattgacttaaatatagatgcc
tacattccaacaaagtatatcgacgatgatgatttgagaatagaaatatataaaaaaatt
gcctcaattacatctgatgatgattattcagacttggtggatgagttaatagacagattt
tcagacatacctaaggaggtctccaatttaatggatacagctctattaagacataatgca
aaaacagcaggtatatcttccataactcaaaagggagaaatttatgaaataaagctgaat
aagatgataggaattgaagaaattaaaaatattcagatggaatttgagaatatagaggtg
atggtgggagaagaagtgggctttaaattgtcaaaactcactcatccctttgaggatttg
aataaagtcacaaaaattttaaaacttacacaaaaaaatcacaaggaactgtag
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