Pedobacter sp. FW305-3-2-15-E-R2A2: AAFF35_02255
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Entry
AAFF35_02255 CDS
T11685
Name
(GenBank) DEAD/DEAH box helicase
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
pedf Pedobacter sp. FW305-3-2-15-E-R2A2
Pathway
pedf03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pedf00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
AAFF35_02255
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pedf03019
]
AAFF35_02255
Enzymes [BR:
pedf01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
AAFF35_02255
Messenger RNA biogenesis [BR:
pedf03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
AAFF35_02255
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
AAA_22
DUF5612
HEPN_MAE_28990
Motif
Other DBs
NCBI-ProteinID:
WZV13049
LinkDB
All DBs
Position
complement(562704..564050)
Genome browser
AA seq
448 aa
AA seq
DB search
MLFEELNLIEPILKALQTEGYTQPTPIQEQSIPTILQGRDLLGCAQTGTGKTAAFAIPML
QLLSKPHTNTKVHKAIKALVLTPTRELAIQIEESFKAYGKNLPIRHLVIFGGVGQKAQTD
ALNRGVDILVATPGRLLDLMNQGFINLRDIEIFVLDEADRMLDMGFIHDVKKVIAKLPVK
RQTLFFSATMPQEIQKLADTILTSPLKVEVTPVSSTAEKIKQEMYFVTKNDKKNLLIHIL
QDKTIETALVFTRTKHGADRIVKDLIKVGIRAEAIHGNKSQNARQRALTNFKAKTTRILV
ATDIAARGIDVDELAHVINYELPNIPETYVHRIGRTGRAGLSGTALSFCDAEEKDFLKDI
EKLIALKIPVTEDHPYAMSWQSLMSAATEKPKGQGGNSRGQGGNSRGQGSRANGKPASGG
QGGGQREPNLSGAKRTPSSGSRRWSSKK
NT seq
1347 nt
NT seq
+upstream
nt +downstream
nt
ttgttattcgaagaattaaacctgattgagcccattttaaaagcgctgcaaacagaaggt
tatacacaacctacccccatacaagaacaatctatcccaaccatacttcaaggcagagac
ttattaggatgtgcgcaaaccggtacaggtaaaactgcagcctttgccatccctatgctt
cagttgctgagtaagccacatacgaatactaaagttcataaagccatcaaagcattggta
ttgacaccaacgcgggaactggctatccagattgaagagagctttaaagcatatggcaaa
aaccttccgatccgtcacctggtgatcttcggtggtgtgggacaaaaagcacaaactgat
gcccttaaccgtggtgtagacatcctggttgctactcctggcagattattagatttaatg
aatcaaggttttatcaaccttcgtgacatcgagatcttcgttctggatgaagcagacaga
atgctggacatgggtttcatccatgatgttaaaaaggtaatcgcgaagcttcctgtaaaa
agacaaaccttgtttttctcggcaaccatgcctcaggaaattcaaaaacttgcagatacc
atcctgacaagccctttaaaagtggaagttactccggtatcttctaccgcagagaaaatt
aagcaggagatgtattttgtaaccaagaacgataagaaaaacttattgatccatatctta
caagataaaacgatcgaaacggcattggtatttaccagaaccaaacatggtgcagatcga
atcgtaaaagacctgatcaaagtaggaatcagagcagaagcaatccacggaaataaatcg
caaaatgcaagacaaagagcattaacgaatttcaaagctaaaacaacaagaatcctggtg
gcaaccgatatcgctgcccgtggaattgatgttgatgaacttgcccatgtgatcaactat
gaattgccgaacattcctgaaacttatgtacacagaatcggtcgtactggtcgtgcggga
ttaagtggaacagcgctttctttctgcgatgcggaagaaaaagatttccttaaagatatt
gagaaacttattgcactgaaaattccggtaacggaagatcatccttatgccatgagctgg
cagagcctgatgagcgctgcaacggaaaaacctaaaggtcaaggcggaaactccagaggt
cagggtggaaactcccgcggacaaggaagcagagcaaatgggaagcctgcaagtggtggt
caaggtggaggtcaacgtgaacctaacctaagcggtgcaaagagaacaccaagcagcgga
agccgcaggtggagttctaaaaaataa
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