Pedobacter sp. WC2423: AB3G38_03595
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Entry
AB3G38_03595 CDS
T10715
Symbol
pnp
Name
(GenBank) polyribonucleotide nucleotidyltransferase
KO
K00962
polyribonucleotide nucleotidyltransferase [EC:
2.7.7.8
]
Organism
pedo Pedobacter sp. WC2423
Pathway
pedo03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pedo00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
AB3G38_03595 (pnp)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pedo03019
]
AB3G38_03595 (pnp)
03016 Transfer RNA biogenesis [BR:
pedo03016
]
AB3G38_03595 (pnp)
Enzymes [BR:
pedo01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.8 polyribonucleotide nucleotidyltransferase
AB3G38_03595 (pnp)
Messenger RNA biogenesis [BR:
pedo03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
AB3G38_03595 (pnp)
Transfer RNA biogenesis [BR:
pedo03016
]
Prokaryotic type
tRNA degradation factors
AB3G38_03595 (pnp)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_PH
RNase_PH_C
S1
KH_1
PNPase
KH-I_KHDC4-BBP
S1_RRP5
Motif
Other DBs
NCBI-ProteinID:
XDC11930
LinkDB
All DBs
Position
954112..956256
Genome browser
AA seq
714 aa
AA seq
DB search
MNVIKKSFDLGDGRTIEIETGKLAKQADGSVVVRMGDTMLLATVVSSVGAKAGVDFLPLS
VDYQEKYAAAGRIPGGFLRREARLSDYEVLISRLVDRALRPMFPEDYHSDTQVMITLISS
DKNIMPDSLAGLAASAAIAVSDIPFNGPISEVRVAKIDGQLVINPYVSDLERATLEFLVA
GTENDIVMVEGEADEISEEEMVEAIEFAHKAIVVQVKVQKELAEAVGKTKKREYSHEDSN
PELKEQVYAATYDQVYAVAKSQTSKGERTEKFAEISAAFVATLGEEVDAVTAFLAKKYFH
DVQYDAIRNLVLDEGMRLDGRDVRTVRPIWSEVSYLPSAHGSAVFTRGETQSLTTVTLGS
KDDEQMIDGAFVNGYNKFLLHYNFPGFSTGEVRPNRGAGRREIGHGHLAMRSLRKVLPGL
EENPYTIRIVSDILESNGSSSMATVCAGTLALMDAGIKIKAPVSGIAMGLITDEKTGKYA
ILTDILGDEDHLGDMDFKVTGTEKGIVACQMDLKINGLKWEVLTAALKQANEARLHILNE
MAKTISAPREDYKDHAPRIVSLSIDKEFIGAVIGPGGKIIQEMQRETGASISIEEVGNKG
IVEIFADNKAAIDAAVKRINAIAAKPDIGATYDGKVKSIMPFGAFVEIMPGKDGLLHISE
IAWERLETMDGVLKEGDKIQVKLLDIDKQGKMKLSRKALLPRPPKPEGAETKPA
NT seq
2145 nt
NT seq
+upstream
nt +downstream
nt
atgaatgtaataaaaaaatcgttcgatcttggagatggaagaaccatcgaaattgaaaca
ggaaaattagctaaacaggctgatggatccgttgtggtaagaatgggtgacactatgtta
ttagcgactgtagtttcttcagtaggtgctaaggctggtgttgactttttacctttatct
gtagattaccaggaaaaatatgcggctgctggtcgtattccaggtggtttcttacgtcgt
gaggccagattatcagattatgaggttttaatctcacgtttggttgaccgtgctttacgc
ccgatgttccctgaagattatcactctgatactcaggtaatgatcacattgatatcttct
gataaaaatataatgccagattcattggctggtttagctgcttcagctgccatcgctgtt
tctgatattccttttaacggaccaatctctgaagttcgtgtggctaaaattgatggtcaa
ttagtgatcaatccttatgttagtgatttagaacgtgctactttagaattcctggtagct
ggtactgaaaatgacatcgtcatggttgaaggtgaagctgatgaaatttctgaagaagaa
atggttgaagctatcgaattcgcacataaagcgatcgttgttcaggttaaagttcaaaaa
gaattagctgaagcggtaggtaaaactaaaaaacgtgagtattcacatgaagatagcaac
ccggaattaaaggagcaggtttatgcggctacttatgaccaggtttatgctgtagctaaa
agccagacttctaaaggtgagcgtacagagaaatttgctgagatttcagcagctttcgta
gccacgcttggtgaagaggttgatgcagttactgctttcttagctaaaaaatatttccat
gatgtacaatatgatgctatccgtaaccttgttttagatgaaggtatgcgtttagatggt
cgtgatgtacgtacggtacgccctatctggagtgaggtaagttacttgccttctgctcac
ggttcggcagtatttacacgtggcgaaacgcaatcattaactacggttactttaggttct
aaagatgatgagcaaatgattgatggtgctttcgttaatggatacaacaaattcttattg
cactacaatttcccaggtttctctacaggtgaagttcgcccgaacagaggtgctggccgt
cgtgaaatcggtcatggtcatctggctatgcgttctttaagaaaagtattaccaggttta
gaagaaaacccatatacaatccgtatcgtttctgatattcttgagtctaatggttcttct
tcaatggcaactgtttgtgctggtacattagcattaatggatgcgggtattaaaatcaaa
gctccggtttcgggtattgcaatgggattaattactgatgagaaaactggtaaatatgca
atccttaccgacattcttggtgatgaagatcatttaggtgatatggacttcaaggttact
ggtactgaaaaaggtatcgttgcttgtcaaatggacttaaaaatcaatggtttgaaatgg
gaagttttaactgctgccctgaaacaagctaatgaggctcgtttacatatcttaaatgag
atggctaaaactatctctgctccacgtgaagattacaaggaccatgctccccgtatcgtt
tctttaagtattgacaaggaattcataggtgctgtaattggcccgggcggtaaaattatt
caggaaatgcaacgtgaaactggcgcatctatctctatcgaagaggtgggtaacaaaggt
atcgttgaaatcttcgcggataataaagctgcaattgatgctgctgttaaacgtattaat
gcaatcgctgctaaaccagacataggtgctacttatgatggtaaagtaaaatctatcatg
ccgtttggtgctttcgttgagattatgccgggtaaagatggtttacttcacatttctgag
atcgcttgggaacgtttagaaactatggatggtgtgcttaaagaaggtgacaaaatccag
gttaaattgttagatatcgataaacaaggtaaaatgaaactttcaagaaaagctttattg
cctcgtccaccgaaaccagaaggtgcagagactaagcctgcttag
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