Pedobacter sp. WC2423: AB3G38_05555
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Entry
AB3G38_05555 CDS
T10715
Symbol
topA
Name
(GenBank) type I DNA topoisomerase
KO
K03168
DNA topoisomerase I [EC:
5.6.2.1
]
Organism
pedo Pedobacter sp. WC2423
Brite
KEGG Orthology (KO) [BR:
pedo00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
pedo03032
]
AB3G38_05555 (topA)
03400 DNA repair and recombination proteins [BR:
pedo03400
]
AB3G38_05555 (topA)
Enzymes [BR:
pedo01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.1 DNA topoisomerase
AB3G38_05555 (topA)
DNA replication proteins [BR:
pedo03032
]
Prokaryotic type
DNA Topoisomerases
AB3G38_05555 (topA)
DNA repair and recombination proteins [BR:
pedo03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHIIR (short-homology-independent illegitimate recombination)
Facilitator
AB3G38_05555 (topA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Topoisom_bac
Toprim_C_rpt
Toprim
NtrZ
Motif
Other DBs
NCBI-ProteinID:
XDC12316
LinkDB
All DBs
Position
1440271..1442868
Genome browser
AA seq
865 aa
AA seq
DB search
MAKNLLIVESPAKAKTIEGYLGKDFIVKSSYGHIRDLIKGDMGIDTNNNFAQTYEVPADK
KQVVAELKKLAKEAEMVWLASDEDREGEAISWHLFETLGLKENKTKRIVFHEITKPAILK
AIESPRTIDYNLVNAQQARRVLDRLVGFELSPVLWKKVKPSLSAGRVQSVAVRLIVDRER
EVNKFNAAAAYKITARFSTGKAREFVKAELPQRFEQEAEAEKFVRDCVNAGFKISSLETK
PAKRNPAAPFTTSTLQQEASRKLGFPVSRTMQVAQRLYESGKITYMRTDSVNLSETALTA
AANEINSAYGQKYHQLRTYKTKSAGAQEAHEAIRPTYFDQHTVTGDSSEQRLYELIWKRA
IASQMSEALFEKTTAQIAVSTRSESLVAEGEVMKFDGFLKVYLESSDDEDTEDNDNENIL
PPLAKGQELSLNVMNATERFSRPPARYTEASLVKKLEELGIGRPSTYAPTISTIQNRGYV
VKEDRDGRSRSFGSIILENGEVTKAIKTEITGAEKSKLFPTDIGEVVNDFLVEHFKGIVD
FNFTAKVEKEFDEIAQGLQNWTKMLHAFYTPFHKEVEVTTETADRANGERLLGVDPVSGK
NVYAKVGKFGPLVQIGQNDDEEKPKYASLMKSQSVGTVTLEDALEQFRLPFQLENYKDKE
VAVGVGRFGPYVKWGETYISIPKNEDPLTVDQSRAIVIIEEKITADAPVAHYEGLPVTKG
TGRFGPFIKWNDLFINVPKAYNFDELSDNDIKELIGKKVEKEANRFIQQWTADKIAIENG
RWGPFIRFGKDMLKLGKNPATNEKYTPEELAVLSLEEVKKLIVEQVPNAFEPKATKKKAA
GTKVAGTKSAAAKAPAKKKAPVKKK
NT seq
2598 nt
NT seq
+upstream
nt +downstream
nt
atggccaaaaatttattaatagttgaatcacctgcaaaagcgaaaacaatagaagggtat
ttgggtaaagatttcattgttaaatcgagctacggacacatccgcgatttaattaaagga
gatatgggaatagatacgaataataatttcgcccagacttatgaagtacccgccgataaa
aagcaagtggtagctgaacttaagaaattagcaaaagaagccgagatggtatggctcgca
tccgatgaggaccgcgaaggggaagcaatttcctggcacctgtttgagacgctgggattg
aaagaaaacaagactaaacgtattgttttccacgaaatcaccaagcctgcaattttaaaa
gcgattgaatctccaagaacaattgattataacctggttaatgcacaacaagcaagacgc
gtgttagaccgcctggtaggttttgaactttctccggtactatggaaaaaagtgaaacct
tctttatcggctggtcgtgtacaatcagtagcggtacgtcttattgtagacagagaacgt
gaagtaaataagtttaatgcagctgctgcctacaaaattacagcgcggttcagcacagga
aaagcaagggaatttgtgaaagcagaattacctcagcgatttgaacaggaagcagaagca
gagaaatttgtgcgcgactgtgttaatgccggttttaaaatcagcagcctggaaactaaa
ccagctaaacgtaatcctgcagcaccttttaccacctcaacgctgcaacaggaagcatcc
aggaaactgggcttcccggtatcccgtaccatgcaggttgcgcaacgtttatatgaaagt
ggaaagatcacttacatgagaacggattcggtaaacttatctgaaacggctttaacagct
gcagctaatgagatcaattctgcctatggacagaaatatcatcagctgagaacttataaa
actaaatccgcaggggctcaggaagcgcatgaggccatccgccctacttactttgatcag
cataccgtaacaggtgatagttctgaacaaaggctgtatgagctgatttggaaacgtgcg
attgcttctcaaatgagcgaagcgttgtttgaaaagacaactgcacagattgcagtgagc
acacgcagtgaaagtctggtcgcagaaggtgaagtcatgaaatttgatggtttcctgaaa
gtttacctggaatcaagtgatgatgaagacaccgaagacaacgacaatgaaaatatcctt
cctcctttagctaaaggtcaggagctgtcactgaatgtaatgaatgcaaccgaacgtttc
tctcgtccgcctgcaagatatacagaggcgagcctggttaaaaaactggaagagcttggc
attggccgtccatctacttatgcacctactatttctaccatccagaatcgtggttatgta
gtgaaagaagatcgtgatggccgcagccgttcattcggttcgattatccttgagaatgga
gaagtcactaaagccattaaaactgaaattaccggtgcggaaaaatctaaattattccct
actgatataggcgaagttgtcaatgacttcttggtagagcattttaaaggtattgttgat
tttaactttaccgctaaagtggaaaaggaatttgatgagattgcccagggcttacagaac
tggacaaaaatgcttcatgctttttatactccttttcataaggaagttgaagtaactact
gaaactgccgacagggcaaatggtgagcgtttactaggcgttgacccggtaagtggtaaa
aatgtttacgcaaaggttggaaagtttggtcctctggtacaaatcggtcagaacgatgac
gaagagaaaccaaaatatgcgagcctgatgaaatctcagtcggtgggtacagtaaccctt
gaagatgctttagagcagttcaggttacctttccagctggaaaattataaagataaagaa
gttgccgtaggtgttggccgtttcggaccttacgtaaaatggggcgaaacttatatttct
atccctaaaaacgaagatccgctaactgttgatcagagccgtgcaatcgtaattatcgaa
gaaaaaattactgctgatgctcctgtagcgcattacgaaggattaccggtgactaaaggt
accggacgtttcgggccatttatcaaatggaatgacttgtttatcaatgtacctaaagct
tataactttgatgaattatctgataatgatatcaaagaactgattggtaaaaaggtagag
aaagaggcaaacagatttatccagcaatggactgctgataaaattgcaatcgaaaacggc
agatggggacctttcatccgtttcggaaaagacatgctcaaattgggtaagaacccggcc
actaacgaaaagtatacacctgaagaactggctgtactttctctggaagaggttaaaaag
ctgattgtggagcaggtcccgaatgcttttgagccaaaagcaacgaaaaagaaagcagct
ggtactaaagttgccggtacaaaaagtgcagcggccaaagctcctgcaaagaaaaaagcc
ccagttaaaaagaaataa
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