Pedobacter sp. WC2423: AB3G38_05640
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Entry
AB3G38_05640 CDS
T10715
Symbol
kdsA
Name
(GenBank) 3-deoxy-8-phosphooctulonate synthase
KO
K01627
2-dehydro-3-deoxyphosphooctonate aldolase (KDO 8-P synthase) [EC:
2.5.1.55
]
Organism
pedo Pedobacter sp. WC2423
Pathway
pedo00541
Biosynthesis of various nucleotide sugars
pedo01100
Metabolic pathways
pedo01250
Biosynthesis of nucleotide sugars
Module
pedo_M00063
CMP-KDO biosynthesis, ribulose-5P => CMP-KDO
Brite
KEGG Orthology (KO) [BR:
pedo00001
]
09100 Metabolism
09107 Glycan biosynthesis and metabolism
00541 Biosynthesis of various nucleotide sugars
AB3G38_05640 (kdsA)
09180 Brite Hierarchies
09181 Protein families: metabolism
01005 Lipopolysaccharide biosynthesis proteins [BR:
pedo01005
]
AB3G38_05640 (kdsA)
Enzymes [BR:
pedo01000
]
2. Transferases
2.5 Transferring alkyl or aryl groups, other than methyl groups
2.5.1 Transferring alkyl or aryl groups, other than methyl groups (only sub-subclass identified to date)
2.5.1.55 3-deoxy-8-phosphooctulonate synthase
AB3G38_05640 (kdsA)
Lipopolysaccharide biosynthesis proteins [BR:
pedo01005
]
Lipid A
AB3G38_05640 (kdsA)
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Gene cluster
GFIT
Motif
Pfam:
DAHP_synth_1
NeuB
Motif
Other DBs
NCBI-ProteinID:
XDC12333
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Position
complement(1463487..1464302)
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AA seq
271 aa
AA seq
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MVNFELDKLKHTTSGNFFLMAGPCAIEGEEIAMRIAERIVTLTDRLEIPFIFKGSYRKAN
RSKGDSFTGIGDEKALKILEKVGKTFGVPTVTDIHESAEAAMAAAYVDVLQIPAFLCRQT
DLLIAAAQTGKVVNVKKGQFLSAGSMRFAVEKIYEAGNKRVILTDRGNTFGYQDLIVDYR
GLPEMQSFGVPVVMDVTHSLQQPNQSSGVTGGKPELIETIAKAAIAVGADGLFIETHPDP
AHAKSDGANMLHLDLLEQLLVKLIKIRKAVV
NT seq
816 nt
NT seq
+upstream
nt +downstream
nt
atggtcaattttgaattagataaattaaaacatacgacttccggtaatttctttttgatg
gccggcccctgtgcaattgaaggggaagaaatcgcaatgagaattgcggaaagaattgta
accctaactgatcggttagaaatcccttttatttttaaaggttcttacagaaaagcaaac
cgctctaaaggtgattcttttacaggtattggtgatgagaaagcattgaagatcttagaa
aaggttggaaagacttttggtgtgccaacggtaactgatattcacgaaagtgctgaggct
gcaatggccgctgcttatgtagatgtattacagatccctgcatttttatgcagacaaacg
gatctgctgattgctgctgcacaaacagggaaagttgtcaatgtaaagaaaggtcagttc
ctttctgcgggctccatgagatttgcagtagagaagatttatgaggctggcaataaaagg
gttatattgaccgatagaggaaatactttcggttatcaggacttaattgttgactatcgt
ggtttaccggaaatgcagtcttttggtgttcctgtagtgatggatgttacgcattcttta
cagcagcccaatcaaagttctggtgtaacgggggggaaacctgagttaattgagactatt
gcgaaggcagcaattgctgttggagctgatgggttgttcattgagacacatcctgatccg
gctcatgcaaaatctgatggtgcgaatatgcttcatctggatttattagagcagttatta
gtgaagttaattaaaattagaaaagcggtagtttag
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