Pedobacter sp. WC2423: AB3G38_05645
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Entry
AB3G38_05645 CDS
T10715
Symbol
recQ
Name
(GenBank) DNA helicase RecQ
KO
K03654
ATP-dependent DNA helicase RecQ [EC:
5.6.2.4
]
Organism
pedo Pedobacter sp. WC2423
Pathway
pedo03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pedo00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
AB3G38_05645 (recQ)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pedo03019
]
AB3G38_05645 (recQ)
03400 DNA repair and recombination proteins [BR:
pedo03400
]
AB3G38_05645 (recQ)
Enzymes [BR:
pedo01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
AB3G38_05645 (recQ)
Messenger RNA biogenesis [BR:
pedo03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
AB3G38_05645 (recQ)
DNA repair and recombination proteins [BR:
pedo03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
AB3G38_05645 (recQ)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
RecQ-1-like_HTH
Helicase_C
RQC
HRDC
RecQ_Zn_bind
ResIII
HTH_40
HTH_10
Motif
Other DBs
NCBI-ProteinID:
XDC12334
LinkDB
All DBs
Position
complement(1464311..1466500)
Genome browser
AA seq
729 aa
AA seq
DB search
MDVKKSLFDNLQTFFGFDNFKGDQESIITNVLERKNTFVIMPTGGGKSICYQLPALMSEG
TAIVISPLIALMKNQVDQLRAFGGSDSIAHFLNSSLNKSEIAQVKSDLLSGQTKLLYVAP
ESLSKPDNIEFLKLITISFVAVDEAHCISEWGHDFRPEYRRIRQVISGLGPDIPIIALTA
TATPKVQQDIIKNLQMADATLFKSSFNRPNLFYEIRPKRDVIKEIIRYIKYNTGKSGIIY
CLSRKKVEEVAEALNLNGIKALPYHAGLEPKVRADTQDKFLMEDVEVIVATIAFGMGIDK
PDVRFVIHHDIPKSMEGYYQETGRAGRDGGEGVCIAFYVQKDVDKLAKFMKDKPVAEREI
GTQILKEVIDYAESGVCRRKQILHYFGENFNETGCNCMCDNCKKPKTYFEAEEHLKVALT
LIKNIGEKFDDAHILCVLLGMETAQTIAYEHSKLQEFGLGKVEGENLWKSLIRQAVLNNF
LSKDIDNYGLLRLTNSGNDFIKNPYSLKFILNVPIESSADDDEDDVKHGSGTLDTQLLLL
LKDLRKKIAKQKNVPPFVVFQDPSLEEMCTHYPIAMDELKQISGVGNGKAMKFGTPFLEL
IKKYVTDNDIERPIDLIIKTQANKSQLKVSIIQNVDRQIGLEDIAKSKGITYSEILKEIE
AIVNSGTKLNLNYFVDEMLDDDRQDEVFDYFRAADNDSIDEALKDLGETDYTREEIQLMR
IKFMSELGN
NT seq
2190 nt
NT seq
+upstream
nt +downstream
nt
atggatgtgaaaaagtcgttgtttgacaacttacaaaccttttttggtttcgataatttt
aagggggatcaggaatcaattattaccaatgttcttgagcggaaaaatacgtttgtaatt
atgccaacgggtggggggaaatctatctgttatcaattaccagctttaatgtcagaaggt
actgccatcgtgatctcaccgcttattgcgctgatgaaaaatcaggtggatcagctgaga
gcttttggcggaagtgacagtattgcgcacttcctgaattcgtctttaaataaatcggaa
attgcccaggtaaaaagcgatttgctgagtggtcagactaaattattatacgtagcacca
gaatcattgtccaagccggataatattgaatttctgaagcttattacgatctcttttgtt
gcggttgatgaagctcattgtatttcagaatggggacatgattttcgtccggagtaccgg
agaatccgccaggtgatcagcggcctgggaccagacatcccgattattgcattaactgca
acggcaacacctaaagtgcagcaggatattattaaaaacctgcagatggctgatgctacc
ttatttaaatcctcgtttaacaggcccaacttattttatgaaatacgtcctaaaagggat
gtcatcaaagaaatcatcaggtacattaaatacaatacaggtaaatccggtatcatttac
tgtctgagcagaaaaaaggtggaagaagttgctgaagcattaaatctgaatgggatcaag
gctttgccttaccatgccggattagagcctaaagtcagagcagatacacaagacaaattc
ctgatggaagatgtggaggttattgtcgctaccatagccttcgggatgggtattgacaag
cctgatgtgcgttttgttattcaccacgatattcctaagagtatggaaggctattatcag
gaaaccggaagagccggacgtgatggcggagaaggtgtttgtattgctttttatgtacaa
aaggatgtagataaactggctaaattcatgaaagataagccggtggccgaacgtgaaatt
ggtacgcagattttaaaagaagttattgattacgctgaatcaggcgtatgccgcagaaaa
cagattttgcactattttggagagaacttcaatgagacaggctgtaactgtatgtgtgat
aactgtaaaaagcctaaaacatattttgaagcagaagagcacttaaaggttgcactgacg
ctgattaaaaatataggggagaagtttgatgatgcacatatcctatgcgttttattaggg
atggaaaccgcacagactatcgcttatgagcatagcaaattgcaggagtttggactgggt
aaagtagaaggtgaaaatctttggaaatctttaatcaggcaggcggtactgaataacttc
ttatcaaaagatattgataactatggtttattaaggctgaccaattcgggaaatgatttt
atcaaaaacccttatagtcttaaattcattctgaatgtgcctattgaaagttcagcagat
gatgatgaagatgatgtaaaacatggtagcggaacactggatacgcaattgcttttattg
ctgaaagatctgagaaagaagatcgcgaaacagaaaaatgttcctcctttcgtcgttttc
caggatccttcactggaagaaatgtgtacccattatccgattgcaatggatgagctgaaa
cagatttcgggtgttggaaatggtaaagccatgaaatttggtacgccttttcttgaactg
atcaaaaaatatgtgacagacaatgatattgagcgccctatagatttaattattaaaaca
caggcaaataaatcacaattaaaggtttccattatacaaaatgtagacagacagatcgga
ctggaagatattgcaaaatctaaaggaatcacttatagtgaaatcctgaaagagattgaa
gccattgtaaactccggaacgaagctgaacctgaactattttgtagatgaaatgctggat
gatgatcgtcaggacgaagtatttgattatttccgcgcggctgacaatgattcaattgat
gaagctttgaaagatttgggagagacggattatacgcgtgaagagatacaattaatgaga
atcaagttcatgtcagaacttggaaattaa
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