Pedobacter sp. WC2423: AB3G38_12980
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Entry
AB3G38_12980 CDS
T10715
Name
(GenBank) DEAD/DEAH box helicase
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
pedo Pedobacter sp. WC2423
Pathway
pedo03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pedo00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
AB3G38_12980
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pedo03019
]
AB3G38_12980
Enzymes [BR:
pedo01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
AB3G38_12980
Messenger RNA biogenesis [BR:
pedo03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
AB3G38_12980
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
AAA_19
UvrD-helicase
DUF5612
DUF758
AAA_22
ERCC3_RAD25_C
Motif
Other DBs
NCBI-ProteinID:
XDC08873
LinkDB
All DBs
Position
3162753..3164078
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AA seq
441 aa
AA seq
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MLFEELNLIEPILKALQAEGYTNPTPIQEQSIPTILTSRDLLGCAQTGTGKTAAFAIPML
QLLNKEHQNTKGPRPIRALVLTPTRELAIQIEESFKAYGKNLSLRHLVIFGGVGQKAQTD
ALHRGVDILIATPGRLLDLMNQGFINLKDVEIFVLDEADRMLDMGFIHDVKKTIAKLPAK
RQTLFFSATMPGEIQKLANTILTDPLKVEVTPVSSTAEKIEQSIYYVDKNDKKNLLIHIL
KDKTITTALVFTRTKHGADRIVKDLIKVGVKAEAIHGNKSQNARQRALTNFKDKTTRILV
ATDIAARGIDVDELTHVINYELPNVPETYVHRIGRTGRAGNSGVSFSFCDGEEKEYLDDI
EKLIALKIPVQEDHPYAMSWQSLMSGAAAAKVKGKSKPSRGGRQERTEYKPNLSGAKRTP
GGGNGGGNRRFSGSRPKAKTD
NT seq
1326 nt
NT seq
+upstream
nt +downstream
nt
ttgttattcgaagaattaaacctgattgagcctattttaaaagcgctgcaagcagagggt
tatactaacccaacccctatacaagaacaatctattcctactatattaacaagcagagac
ttactaggctgtgcgcaaaccggaactggtaaaacagcggcttttgcaattcctatgtta
caactgctgaataaagaacatcagaatactaaaggcccgagaccgatccgtgccctggta
ttaacgccaacacgtgagcttgccattcagattgaagaaagtttcaaggcttatggtaaa
aatctttcgctgcgccacctggttatttttggtggtgttggacaaaaagcacaaactgac
gctttacatcgcggcgtagatatcctgatcgctacaccaggcagattgcttgatttaatg
aatcagggtttcatcaaccttaaagatgttgaaatatttgtactggatgaagcagacaga
atgctggacatgggtttcattcatgatgtgaagaaaactattgcaaagctgcctgctaaa
agacaaactttatttttctcggcaacgatgcctggtgaaattcaaaaactggccaatacg
attttaactgatccgttaaaagtagaagtaacgcctgtgtcttcaactgcggaaaaaatt
gagcagtctatctattacgtagataaaaatgataagaaaaatctattaatccatattctt
aaggataaaacgattactacagcacttgtttttacccgtacaaaacatggtgcagaccgt
atcgttaaagacctgattaaagttggtgtaaaagccgaagctattcacggtaataaatca
cagaatgcaagacaaagagctttaactaattttaaagacaaaactacccgcattcttgta
gcaactgatattgctgcccgtggtatcgacgtagatgagttaacacatgtgatcaactat
gaattgccaaatgttcctgaaacttacgtacacagaattggccgtacaggtcgtgctggt
aacagtggggtttccttctctttctgcgatggagaagaaaaagaatacctggacgatatc
gagaaattaatcgcgcttaagatccctgtacaggaagatcatccttatgcaatgagctgg
cagagcctgatgtctggcgccgcagcggcaaaagtaaaaggaaagagcaaaccttcaaga
ggtggccgtcaggaaagaactgaatataagccaaaccttagcggagcaaaaagaactccg
ggtggcggcaatggtggtggtaaccgcagattcagcggatcaagacctaaggctaaaaca
gattaa
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