Pedobacter sp. WC2423: AB3G38_16895
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Entry
AB3G38_16895 CDS
T10715
Symbol
mfd
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
pedo Pedobacter sp. WC2423
Pathway
pedo03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
pedo00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
AB3G38_16895 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
pedo03400
]
AB3G38_16895 (mfd)
Enzymes [BR:
pedo01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
AB3G38_16895 (mfd)
DNA repair and recombination proteins [BR:
pedo03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
AB3G38_16895 (mfd)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
TRCF
UvrB_inter
Helicase_C
CarD_TRCF_RID
ResIII
Cas3-like_C_2
RecG_dom3_C
Motif
Other DBs
NCBI-ProteinID:
XDC09614
LinkDB
All DBs
Position
complement(4062109..4065450)
Genome browser
AA seq
1113 aa
AA seq
DB search
MNIRDLINRYKTDERIEALAKTLNSGKGNKLQLKGLVGSADATVAVTTYFLLHKPQLFIL
PDREEAAYFMADLESILEKEVLIFPSSFRKAFDFTQVDTANVLARAEVLNELNHNSSFGK
IVVTYPEALAEKVINRDVLEKNTLEISLGVKLGIDFINEFLVDYDFNRTDFVYEPGQFSI
RGGIVDIFSFSHDLPYRIEFFGDEVESIRTFEIESQLSVEDVKTFTIIPNVQSKYLTESN
INLLDYVEKDTQLWFKDVEFTLDIIKTGYKKAVELWKALPAKEKQENLDWIDPKFAFSDE
RMIGDILHDFPVIEFGKQFFYKTDHVFLFDTKPQPSFNKDFNLLIHNLKENEKNGIHNFI
SSSSPKQTERLYAILDDIDKTAKFVPVNIQLREGFIDPQQSIAFYTDHQIFDRFYKYKLK
RGYQRSQAITMKDLRDLKPGDFVTHIDHGIGKYAGLEKVEVNGKTQEMIRLVYADNDLLY
VNINSLNRIAKYSGKDGTPPKMNKLGTEAWDKLKKTTKKKVKDIARDLIKLYALRKSQVG
TAFDPDGYLETELEASFIYEDTPDQMKATNDVKKDMEAPHPMDRLVCGDVGFGKTEIAIR
AAFKAVANGKQAAVLVPTTILALQHFKTFSGRLKEFPCKVDYINRFKTNKQIKETLAQVE
EGKVDIIIGTHRLLSKDVKFKSLGIMIIDEEQKFGVTAKEKLRALRVNVDTLTLTATPIP
RTLHFSLMGARDLSIMSTPPPNRQPVNTELHVFNDKLIQEAVQFELDRGGQVFFIHNRVN
DLPQLGGLIQTLVPKARIGIAHGQLDGDALEDVMLDFINGEKDVLVATTIIEAGLDIPNA
NTIIINHAHMFGLSDLHQMRGRVGRSNKKAFCYLLSPPLSTLTSEARKRLSAIEEFSDLG
SGFNIAMRDLDIRGSGNLLGAEQSGFIAEIGFEMYHKILDEAIQELKADEFKELFKDDKE
RPFVTFTQIDTDLELYIPDDYVTNITERYNLYTELSKLDNELQLAAFETSLKDRFGSVPK
PVKTMLNVLRLQWTAKKLGFEKLSFKKGVLRGYFIADKQSNFFDSPMFHKILTFAQQHPR
MCNLKEVKNTLRIAFEDLKTVDEAIQMLQMVAE
NT seq
3342 nt
NT seq
+upstream
nt +downstream
nt
gtgaacatccgtgacctgatcaatagatataaaactgatgagcgcatcgaagcgcttgca
aagaccctcaattcgggtaaaggtaataaacttcaattaaaaggtttagtaggctctgcc
gatgctacagttgccgttaccacctacttcctgctgcataagccacaattatttatcctt
cctgacagagaagaagctgcttattttatggcagatctggaaagtatacttgaaaaagaa
gtcttaatttttccatcttctttccgtaaagccttcgacttcacccaggtggatactgct
aatgtactggcaagagcagaagtgcttaatgagctgaaccacaattcttcctttggaaaa
atcgtggttacttatcctgaagcgcttgccgaaaaggtaatcaacagagatgttctcgaa
aaaaatacgcttgaaataagtctgggtgtaaaactgggtattgactttatcaacgaattt
cttgttgattatgattttaaccgcactgatttcgtttatgaacccggccagttctctatc
cggggtggtatcgttgatattttctccttctctcatgatcttccttaccggatagaattt
tttggggatgaagtagagagcatacgtacattcgaaatagaaagccagctttccgtagaa
gatgtcaagacctttactattattcctaacgtacagtccaagtaccttacagaaagcaat
attaacttgctggattatgtggagaaagacactcaactctggtttaaagatgtagaattc
actttggacatcattaaaactggttataaaaaggccgtagaattatggaaagcacttcct
gcgaaagaaaaacaggaaaacctggactggattgacccgaaatttgctttctctgacgaa
agaatgattggagacatcctgcatgatttcccggtgatagaatttggtaagcaattcttt
tataaaaccgaccacgttttcctgtttgatactaagccacagccatctttcaataaagat
tttaatctgctgatccataatttaaaagaaaacgagaaaaacggaattcataattttatt
tccagctcttcccctaaacaaaccgagaggttatatgctatattggacgatattgacaaa
accgcgaagttcgttcctgttaatattcagttaagggaaggttttattgatccgcaacaa
tccatagccttttacaccgatcaccagatctttgaccgcttctataaatataagttaaaa
agaggttatcagcgcagccaggccattaccatgaaagatctgagagatctgaaacctggc
gatttcgttacccatatagaccatggtataggtaaatatgccggtttggaaaaggtagaa
gtcaatggcaaaacgcaggaaatgatccggttggtatacgctgataatgatttgctttac
gtgaatatcaactctttaaaccgtattgcaaaatacagcggaaaagacggtacaccacca
aaaatgaataaactgggtacagaagcctgggataaactaaaaaagactacaaaaaaaaaa
gttaaagacattgcccgggacctgatcaagctttatgccctgagaaaatcacaggtagga
accgcgtttgatcctgacggttatctggaaactgaactggaagcttccttcatttatgaa
gatacacccgatcagatgaaagccaccaatgatgttaaaaaggatatggaagctccgcat
ccaatggacaggctggtttgtggtgacgtaggtttcggaaaaacagaaatagccatcaga
gctgcatttaaagccgtagcaaatggtaagcaggctgcagtgctggttccaacgactatt
cttgctttacagcatttcaaaacattttcaggaagactaaaagagtttccttgtaaagta
gattatattaaccgtttcaagaccaataaacagatcaaagaaacactggcacaagtagaa
gaaggtaaagtcgacatcattatcggaacacatcgtttattaagtaaagacgtgaaattc
aaatcactcggcattatgattatcgatgaagaacagaaatttggtgttactgccaaagaa
aaactccgtgcactgcgtgtcaacgtagatacccttacacttactgctacaccaatacca
agaaccctgcacttttcgctgatgggtgcaagggatctgtctattatgagtaccccgcca
ccaaaccggcagcctgtgaatactgaacttcacgtattcaatgataaactgatccaggaa
gcagtacaatttgaactggatcgtggaggacaagtattttttattcataaccgggtaaat
gatctgccacaactcggcggtctgatacaaacactcgttccaaaagcccgtataggtatt
gctcacggacaattagacggagatgcactggaagatgtcatgcttgatttcattaatgga
gaaaaggatgtgcttgttgctacgaccattatcgaagcaggactggatattccaaatgcg
aataccatcattattaaccatgctcacatgtttggtttgagtgatctgcaccagatgcgt
ggaagggtaggaagatctaataaaaaagccttctgttatctgttaagtccacctttatcc
acccttacctccgaagccaggaaacgtttaagtgccattgaagaattttctgatctgggc
agcggtttcaatattgccatgcgtgacctggatattcgcggcagtggaaacctcctgggt
gctgaacaaagcgggtttattgccgagataggctttgaaatgtaccacaagatattagat
gaagccatacaggaacttaaagctgatgaattcaaagaattgttcaaagatgataaagaa
aggccgtttgtcacttttacacaaatcgatacggatctggaattatacattccggatgat
tacgtaaccaatattacagagcgatacaacctctatacggaactatccaagctggataac
gaattacagctggccgcctttgaaacgtccttaaaagaccgctttggtagtgttccgaag
cccgtaaaaacgatgttgaatgtgctgcggttacaatggacagctaaaaagcttggattt
gaaaaactgagcttcaagaaaggagtattgagaggttattttattgcagataaacaatct
aatttctttgactccccaatgttccataaaatattaaccttcgcacagcagcatccccgg
atgtgtaacctgaaagaagttaaaaacactttaagaatcgcttttgaagatctgaaaacg
gtagatgaagctattcaaatgctgcaaatggttgcagaataa
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