Pedobacter sp. WC2423: AB3G38_20440
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Entry
AB3G38_20440 CDS
T10715
Symbol
rny
Name
(GenBank) ribonuclease Y
KO
K18682
ribonucrease Y [EC:3.1.-.-]
Organism
pedo Pedobacter sp. WC2423
Pathway
pedo03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pedo00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
AB3G38_20440 (rny)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pedo03019
]
AB3G38_20440 (rny)
Messenger RNA biogenesis [BR:
pedo03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
AB3G38_20440 (rny)
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_Y_N
HD
KH_1
HDOD
KH_KhpA-B
Glycophorin_A
Motif
Other DBs
NCBI-ProteinID:
XDC10303
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Position
4893941..4895503
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AA seq
520 aa
AA seq
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MEIIGIIGYVLASLVVGILVGRYLLRNLLKKQEIAAQSKVKKILKEAESNAEILKKDKLL
EAKEKFLQLKTEHEQEVNAKNNQVNQRENAIKQKEQSVNQRLENMNRKEQELDNSKKNLD
KQTDIAIKKQEEVDVLKNQHVKQLETIAGLSAEEAKNQLVENMKQEARTQAMIQVKDIVD
EARLTATKEAKKVVIQTIQRTAVEAAIENTVSIFHIESDEIKGRVIGREGRNIRALEAAT
GIEIIVDDTPEAIILSGFDPVRREIARLALHRLVTDGRIHPARIEEVVAKTKKQIEDEIV
EIGERTVIDLGIHGLHPELIRMVGRMRYRSSYGQNLLHHSREVANFCATMAAELGLNAKM
AKRAGLLHDIGKVPDDNPELPHAILGMQLAEKYKEHPEICNAIGAHHDEIEMTSMISPII
QACDAISGARPGARREVVESYIKRLKELEELALSYPGVEKTFAIQAGRELRVVVESERVT
DQQAELLAADISNRIQTEMTYPGQIKVTVIRETRSVAFAK
NT seq
1563 nt
NT seq
+upstream
nt +downstream
nt
atggaaataataggaataattggatatgtactggccagcttagttgttgggatactggtt
ggcagatatttactgcgcaacctgttgaaaaaacaggagattgctgcacagtcaaaagtg
aagaagatcttaaaagaagctgaaagtaatgcagagatcttaaagaaagacaaattactg
gaagctaaagagaagtttttacaattgaagactgagcacgagcaggaagtaaatgcaaaa
aataaccaggtaaatcaaagagagaacgctattaaacagaaagaacaatctgtgaatcaa
cgtttggaaaacatgaaccgcaaggaacaggagctggataacagtaagaagaacctggat
aaacaaactgatattgcgattaaaaaacaagaagaagttgatgtgctgaaaaatcagcat
gtgaaacaactggaaactattgcaggattaagtgctgaagaagcaaaaaatcagttggta
gagaacatgaagcaggaagccagaactcaggcgatgatccaggttaaggatattgtagat
gaggccaggttaactgcaactaaagaagctaaaaaagtcgttatccagactatacagcgt
acagctgtagaagcggcgatcgaaaatacggtttctatttttcatattgagagtgatgag
attaaaggtcgtgtaattgggcgtgagggtagaaacatccgtgcactggaagcagcgact
ggtattgagattattgtagatgatacacctgaggctattattttatcaggttttgacccg
gtaagaagagagattgcccgtttggctttacaccgcctggtaactgacggacgtattcac
cctgcacgtattgaagaggtggtagcgaaaacgaagaaacaaattgaagatgagattgta
gaaatcggtgaacgtacggttattgatttagggattcatggtttgcaccctgagttaatc
agaatggtgggacgtatgcgttaccgttcttcttatggacagaatttattacatcactcg
cgtgaggtggctaacttctgcgcaacaatggccgcagaattgggcttaaatgctaaaatg
gccaaacgtgcaggattattacatgatataggtaaagtacctgatgataaccctgaattg
ccacatgctattttaggaatgcagcttgcagaaaaatataaggaacatcctgaaatttgt
aatgcaatcggagctcaccatgatgaaatcgaaatgacttctatgatctcaccgatcata
caggcttgtgatgcaatttctggtgcgcgtcctggtgcaagacgtgaggttgtggaaagt
tatatcaaacgtttaaaagaattagaagagctggctctttcttatcctggtgtagagaaa
acttttgctattcaggcgggaagagagttaagagtagtagttgaaagtgaaagagtaact
gatcagcaggcagaattactggcagcagatatctctaatcgtattcaaacagagatgact
tatcctggtcagatcaaggttactgtaatcagagaaacccgttcagttgcctttgctaaa
taa
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