Pedobacter sp. WC2423: AB3G38_24970
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Entry
AB3G38_24970 CDS
T10715
Name
(GenBank) DNA-formamidopyrimidine glycosylase family protein
KO
K10563
formamidopyrimidine-DNA glycosylase [EC:
3.2.2.23
4.2.99.18
]
Organism
pedo Pedobacter sp. WC2423
Pathway
pedo03410
Base excision repair
Brite
KEGG Orthology (KO) [BR:
pedo00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
AB3G38_24970
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
pedo03400
]
AB3G38_24970
Enzymes [BR:
pedo01000
]
3. Hydrolases
3.2 Glycosylases
3.2.2 Hydrolysing N-glycosyl compounds
3.2.2.23 DNA-formamidopyrimidine glycosylase
AB3G38_24970
4. Lyases
4.2 Carbon-oxygen lyases
4.2.99 Other carbon-oxygen lyases
4.2.99.18 DNA-(apurinic or apyrimidinic site) lyase
AB3G38_24970
DNA repair and recombination proteins [BR:
pedo03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA glycosylases
AB3G38_24970
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
H2TH
Fapy_DNA_glyco
NFACT_N
Ribosomal_S13
HNOB
HlyD_2
LIX1
CID_GANP
Motif
Other DBs
NCBI-ProteinID:
XDC11181
LinkDB
All DBs
Position
5923794..5924573
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AA seq
259 aa
AA seq
DB search
MPELPDLEIFSRNLEQQLSGKLLKEVIVKNGKKLNVSVKELKSAIEDQKLSQVSRAGKEL
YFGFENKAVLSIHMMLKGELHLSKQEIVPKHAIIELLFKDGTQFCLTDFQGMAKATLNPA
ADETPDALAPEVDAGFFKKIFAAKKAAVKNVLLDQHIIRGIGNAYADEILWEAGISPFSP
ANKIPDEKLKDLSKAVRHVLENAVKQIAKTHPDIISGEVRDFLKIHSTKKTHSPSGVPIL
MVKTGARKTYYTEEQEVFN
NT seq
780 nt
NT seq
+upstream
nt +downstream
nt
atgcctgaattaccagatttagaaattttcagccgcaatcttgaacagcaactgagcggc
aaactgctgaaagaagttattgttaaaaatggtaagaaactgaatgtttctgtaaaagaa
ttaaagtctgctattgaagatcaaaagcttagccaggtatcccgtgctggaaaagaattg
tatttcgggtttgagaataaggcagtactcagtatacatatgatgctgaaaggcgaactt
cacctgtctaaacaagaaatagttccaaaacatgctattattgaactgctttttaaagat
ggcactcaattttgtctgactgatttccagggaatggccaaagcgactttaaatcctgct
gctgatgaaactccggatgctttagctccggaagtcgatgctggtttctttaaaaaaatc
tttgcggctaaaaaagcagctgttaaaaatgtattactggatcagcacatcatccgcgga
atcggcaatgcttatgcagatgagattttatgggaagcgggaatttcgcccttttctccc
gcaaataaaattcccgatgaaaaactgaaagacctttccaaagcggtgaggcatgtgctg
gaaaacgcagtgaaacagattgctaaaactcacccggacattatcagtggagaagtcaga
gatttcctgaaaatccatagtacgaagaaaactcacagtccgtctggtgtacctattctg
atggtaaaaacaggagcgaggaagacttattatacagaagaacaagaggtctttaactaa
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