KEGG   Phycodurus eques (leafy seadragon): 133395677
Entry
133395677         CDS       T09682                                 
Symbol
snrnp40
Name
(RefSeq) U5 small nuclear ribonucleoprotein 40 kDa protein
  KO
K12857  Prp8 binding protein
Organism
pee  Phycodurus eques (leafy seadragon)
Pathway
pee03040  Spliceosome
Brite
KEGG Orthology (KO) [BR:pee00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    133395677 (snrnp40)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03041 Spliceosome [BR:pee03041]
    133395677 (snrnp40)
Spliceosome [BR:pee03041]
 Complex B
  U4/U6.U5 tri-snRNP components
   U5 snRNP specific factors
    133395677 (snrnp40)
 Complex C
   U5 SnRNP specific factors
    133395677 (snrnp40)
SSDB
Motif
Pfam: WD40 WD40_Prp19 WD40_CDC20-Fz WD40_WDHD1_1st Beta-prop_TEP1_2nd WDR55 EIF3I Beta-prop_EML_2 Beta-prop_CAF1B_HIR1 WD40_MABP1-WDR62_2nd Beta-prop_WDR90_POC16_2nd Beta-prop_TEP1_C Beta-prop_WDR75_1st NBCH_WD40 Beta-prop_EML WDR90_beta-prop_4th ANAPC4_WD40 Beta-prop_IFT122_1st Beta-prop_SPT8 Beta-prop_EIPR1 Beta-prop_SCAP Beta-prop_RIG_2nd Beta-prop_DCAF4 WD40_MABP1-WDR62_1st WD40_RFWD3 Beta-prop_IFT140_1st Beta-prop_WDR75_2nd Beta-prop_Vps41 Beta-prop_WDR19_1st eIF2A Beta-prop_WDR35_TULP_N Beta-prop_NWD2_C Beta-prop_IFT140_2nd WDR54 Beta-prop_VPS8 WD40_like
Other DBs
NCBI-GeneID: 133395677
NCBI-ProteinID: XP_061520773
LinkDB
Position
20:1721809..1725039
AA seq 372 aa
MIEPKKRMADMAVVPASTMKRPRTELVAAAQSQQLMAGGPPRTSSLQAPIMLMSGHEGEV
YCCRFHPNGATLASSGFDRLILMWNVYGDCDNFATLKGHSGAVMELHYNTDGSLLLSAST
DKTVGVWDSETGERVKRLKGHTSFVNTCYPARRGPQLVCTGSDDGTVKLWDVRKKGAVHT
FQNTYQVLAVTFNDTSDQILSGGIDNDIKVWDLRQNKLMYNMHGHGDSVTGLSLSSEGSY
LLSNSMDNTVRIWDVRPFAPKERCVKIFQGNVHNFEKNLLRCSWSTDGSKIAAGSADRFV
YIWDTTSRRILYKLPGHAGSVNEVVFHPEEPVGKSRCRRPTFEAAVSPRPIVSAPVREGF
LERCCSNLLHQG
NT seq 1119 nt   +upstreamnt  +downstreamnt
atgattgagcccaagaagagaatggcggacatggcggttgtgcccgcctccaccatgaag
agaccccggacggagctggtggcggcggcccagtctcagcagctcatggccggggggcct
ccaaggacctccagcctgcaggcccccatcatgctgatgtcgggccacgagggcgaggtc
tactgctgcaggtttcaccccaacggagccaccctggcctcgtccggctttgataggctc
attttgatgtggaacgtgtacggcgactgtgacaactttgccacgctgaagggtcacagt
ggggccgtgatggagctgcactacaacacagatggaagcctgctgttgtctgcgagcacg
gacaagacggtgggcgtgtgggacagcgagacgggcgagcgggtcaagcgtctgaagggc
cacacctccttcgtcaacacctgctacccggcccgcaggggaccccagctcgtgtgcacc
ggtagcgacgacgggaccgtcaagctgtgggacgtgcgcaagaaaggcgccgtccacacc
ttccagaacacctaccaggtgctggccgtcaccttcaacgacaccagcgaccagattctg
tccggaggcatcgacaacgacatcaaggtgtgggacctgaggcagaacaagctgatgtac
aacatgcacgggcacggcgactccgtcaccggactcagtctcagctcggagggatcctac
ctgctctccaactccatggacaacactgtgcgtatttgggacgttcgacccttcgcgccc
aaggaaagatgtgtgaagattttccagggcaacgtacacaactttgaaaagaatctgctg
aggtgctcgtggtccactgacggcagcaaaatagctgcgggatcagctgacagatttgtc
tacatttgggacaccacgtcccgccgcatcctctacaagctgccgggccacgccggctcc
gtcaacgaggtcgtctttcaccccgaggagcccgtcggtaagtcgcgttgccgccggccg
acgtttgaggccgcggtcagccctcggccgatcgtgagcgcacctgttcgcgaaggtttc
ttagaacggtgctgctcaaaccttttacaccaaggctaa

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