Phycodurus eques (leafy seadragon): 133397150
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Entry
133397150 CDS
T09682
Symbol
cpsf6
Name
(RefSeq) cleavage and polyadenylation specificity factor subunit 6 isoform X1
KO
K14398
cleavage and polyadenylation specificity factor subunit 6/7
Organism
pee
Phycodurus eques (leafy seadragon)
Pathway
pee03015
mRNA surveillance pathway
pee03250
Viral life cycle - HIV-1
Brite
KEGG Orthology (KO) [BR:
pee00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
133397150 (cpsf6)
09125 Information processing in viruses
03250 Viral life cycle - HIV-1
133397150 (cpsf6)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pee03019
]
133397150 (cpsf6)
Messenger RNA biogenesis [BR:
pee03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Pre-mRNA cleavage factor Im (CFIm)
133397150 (cpsf6)
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Ortholog
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GFIT
Motif
Pfam:
RSLD_CPSF6
RRM_1
PRP38_assoc
Motif
Other DBs
NCBI-GeneID:
133397150
NCBI-ProteinID:
XP_061523699
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Position
22:complement(4274728..4282854)
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AA seq
576 aa
AA seq
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MADGVDHIDIYADVEEEFSQEPDYPVHEQIDLYDDVISPSANNGDAPEDRDYLDALPAQG
GSDGGKAAPPNVVYTYSGKRIALYIGNLTWWTTDEDLTEAIRSIGITDVLEIKFFENRAN
GQSKGFALVCVGSEGSSRKLMELLSKRELHGQNPIVAPCNKQSLSQFEMQSRKSKHSTQS
GQMSGEGKAGPPGGGRAGFPMGSRGSRGRFPGPPSGPGGDRFPGGVGPGGPPPHFAGSGM
RPDLIRHQDGHLDMNFNPGSWRDRGGIQGPPRPPPGPPGPPGPPPGQGLPPPLGPPNRGD
RPPPPVLFPGQFGQLPLGPLPPGPPPPGYGPPPGPPPPQQGPPPPGPFPPRPPGPIGPPL
ALAPPPHLGGPPPGGPPPAPHVNPAFFPPPGGNNMPPNDSRGPPGPNDPYGRPPPYERGD
YGPGGRDMESSRTPLSEAEFEEIMNRNRAISSSAISRAVSDASAADYGSAIETLVTAISL
IKQSKVSADDRCKVLISSLQDCLHGIESKSYGSTRRERSRERDHSRSREKSRRHKSRSRE
RHEDYYRERSRERDRHRERDRDRDREREREREYRHR
NT seq
1731 nt
NT seq
+upstream
nt +downstream
nt
atggcggacggtgtagatcacatcgacatctacgccgacgtagaggaggagttcagccag
gagcccgactaccccgtccatgaacagatcgacctgtacgacgacgtgatatccccatca
gccaataatggtgacgcgccagaggaccgcgactacctggacgcactgcctgcacagggg
ggctcagatggaggcaaggccgccccgcccaatgtggtgtacacctactcggggaagcga
atcgctctgtacattgggaacctcacgtggtggacaacagatgaggacctcacagaagca
atccgctcaatagggatcacagatgtgttggaaatcaagttctttgaaaacagagccaat
gggcaatccaaagggtttgccctggtatgtgttggctcagaggggtcatccaggaagcta
atggagcttttgtccaagagagagttgcacggtcagaatcccattgtggcgccgtgcaac
aagcagtctctcagccagtttgagatgcagtcccgtaaaagtaagcacagcacacaatcg
ggacagatgtctggcgaaggtaaagccggtcctccgggcggcggccgtgccggttttccg
atgggcagtcgaggaagtcgaggcaggttccccgggccgcccagcggccctggaggagac
cgcttcccaggtggtgttgggcccggtggaccgccgccacacttcgctggctcggggatg
agacctgatttgatcaggcaccaagatggccacctggatatgaatttcaatcctgggagc
tggcgtgacagaggtgggatccagggccccccacgtccccctccaggtccacccggccca
ccaggaccaccccctggccagggcctgcccccaccactcggtcctccaaatcgtggtgac
aggccacctccccccgttctctttcccggtcagtttggccagctacctttagggcccctg
cctcccggccccccgcccccaggttacggtccacctcccggaccgccgccgccccagcaa
ggccccccgcccccaggaccgttcccgccacgtcccccgggcccgatcggcccccccttg
gctctggctccaccgcctcacttgggaggtcccccgcccggcggaccgccgcctgctccc
catgtcaatcccgccttcttccccccgcctggtggcaacaacatgccgcccaatgacagc
aggggcccccctggaccaaatgacccatacggacgcccgccaccttatgagagaggagac
tatggtcctggaggccgggacatggagtcatcacggacccctctgagcgaggccgagttt
gaggagatcatgaacaggaaccgagccatctcctccagcgccatctccagagcggtttct
gatgccagtgcagctgactacggcagcgccatcgagacgttggtcaccgccatcagtctg
attaagcagtccaaagtatcggcggatgaccgctgcaaggtcctcataagctctcttcag
gactgtctccacggaatagagtccaaaagttacggctccaccaggcgagaacgttccaga
gagcgcgatcacagccgctcgagggaaaagagcagacggcacaagtcccgcagtcgcgag
cgccacgaggactactaccgcgaacggagccgtgagcgggaccgccaccgcgagagggac
cgtgaccgagaccgggagagggagagggagcgggagtatcggcaccgctaa
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