Phycodurus eques (leafy seadragon): 133397214
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Entry
133397214 CDS
T09682
Symbol
lsm8
Name
(RefSeq) LSM8 homolog, U6 small nuclear RNA associated
KO
K12627
U6 snRNA-associated Sm-like protein LSm8
Organism
pee
Phycodurus eques (leafy seadragon)
Pathway
pee03018
RNA degradation
pee03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
pee00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
133397214 (lsm8)
09123 Folding, sorting and degradation
03018 RNA degradation
133397214 (lsm8)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pee03019
]
133397214 (lsm8)
03041 Spliceosome [BR:
pee03041
]
133397214 (lsm8)
Messenger RNA biogenesis [BR:
pee03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
133397214 (lsm8)
mRNA degradation factors
5'-3' decay
Lsm complex
133397214 (lsm8)
Spliceosome [BR:
pee03041
]
Complex B
U4/U6.U5 tri-snRNP components
LSm proteins
133397214 (lsm8)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LSM
DUF150_C
Motif
Other DBs
NCBI-GeneID:
133397214
NCBI-ProteinID:
XP_061523815
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All DBs
Position
22:1039069..1040251
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AA seq
96 aa
AA seq
DB search
MSTALESYINRTVAIVTSDGRMIVGTLKGFDQTINLILDESHERVFSSGQGVEQVVLGLY
IVRGDNVAVIGEIDEETDSTLDLGNIRAEPLNSVVH
NT seq
291 nt
NT seq
+upstream
nt +downstream
nt
atgtccacggcactggagagctacattaaccgtacggtggccatcgtgacgtcagacggc
aggatgatcgtgggcacgctcaagggcttcgaccagaccatcaacttgatcctggacgag
agtcatgaacgcgtgttcagctcaggtcagggcgtggagcaagtggttctgggactttac
atcgtccggggagacaacgtcgctgtgatcggcgagatcgacgaggagacggactccacg
ctggatctggggaacatccgagcagagccgctcaactccgtcgtccactga
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