Phycodurus eques (leafy seadragon): 133397508
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Entry
133397508 CDS
T09682
Symbol
upf2
Name
(RefSeq) regulator of nonsense transcripts 2 isoform X1
KO
K14327
regulator of nonsense transcripts 2
Organism
pee
Phycodurus eques (leafy seadragon)
Pathway
pee03013
Nucleocytoplasmic transport
pee03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
pee00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
133397508 (upf2)
03015 mRNA surveillance pathway
133397508 (upf2)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pee03019
]
133397508 (upf2)
Messenger RNA biogenesis [BR:
pee03019
]
Eukaryotic type
mRNA surveillance and transport factors
Surveillance factors
Surveillance complex
133397508 (upf2)
mRNA cycle factors
P-body specific factors
133397508 (upf2)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
MIF4G
Upf2
DUF1722
Motif
Other DBs
NCBI-GeneID:
133397508
NCBI-ProteinID:
XP_061524454
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Position
22:complement(1200827..1216456)
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AA seq
1282 aa
AA seq
DB search
MPAERKHAVNMDEKDICSASSKDKDKEKDAERKAAAAAAAARDKAKDEAKMSGKKDGGKD
EKRKRQEEEKKRKEEKERRKKEEEKQKAEEEQKQKEEEVKRQQEEQERKLQEEEAKRQRE
EEAAILKEQEEGHQLHQEAWERHHCRKELRGRNQNAHEARPEEAFFTRLDSSLKKNTAFV
KKLRTLTEQQRDSLSNDFASLNLSKYIGEAVSSVVEAKLKISDVGSAVHLCSLFHQRYGE
FAPLLLQAWKKHFEARKEDKVPNVSKLRTDLRFLAELTIVGFFTDKEGLSLIYEQLKNII
GADRETHTHVSVVISFCKHCGDDIAGLLPRKVKAAADKYGLAFPPSEIISAEKQQPFQNL
LREYFTSLAKHLKKDHRELQNIERQNRRILHSKGELSEDRHKQYEEFATSYQKLLANTQS
LADLLDENMPELPQDKTVQEEHGPGIDIFTPGKPGEYDLEGGIWEDEDARNFYENLVDLK
AFVPAILFKDNEKGGQGKDKDEAKADGREPREAAGTTEELELELEALDIADEPLELEGAD
EAESEELAKKLMDEQEQEDEEANTGSHLKLIVDAFIQQLPNCVNRDFIDKAAMDFCMNMN
TKSNRRKLVRALFTVPRQRLDLLPFYSRLVATLHPCMSDVAEDLCSMLKGDFRFHIRKKD
QINIETKNKTVRFIGELAKFKMFSKTDTLHCLKMLLSDFTHHHVEMACTLLETCGRFLFR
SPDSHLRTSVLLEQMMRKKQAQHLDARYVTMVENAYYYCNPPPMEKTVKKKRPPLQEYIR
KLLYKDLSKVTTEKVLRQMRKLPWQDPEVKSYLICCMVNIWNVKYNSIHCVANLLAGLVA
YQEDVGIHVVDGVLEDIRLGMEVNQPKFNQRRISSAKFLGELYNYRMVESAVIFRTLFSF
ISFGVSQDGSPSSLDPPEHLFRIRLVCTLLDTCGQYFDRGSSKKKLDCFLIYFQRYVWWK
KSVEAWTKEHPFPIDIDYMISDTLELLRPKMKISSSLEEATRQVVDLEREVLVKLGLAME
RGGRSSAVSEGEGLDEEDDDEDEEGGAETEEQSGNESEINEPEEDEASENEDEERDEEEE
ENTDYLTDSNKENETDEENNEVTIRGGGLKHVACAEDEDFIQALDKMMLENLQQRSGETV
KVHQLDVAIPLQLKSQLRKGGSSSQPSISEADADVSDTMQFVMLTRKGNKQQYKILNVPL
SSHLAANHFNQQQAEQEERMRMKKLTLDINERQEQEDYQEMLQSLAQRPAQANTNRERRP
RYQHPKGAPNADLIFKTGGRRR
NT seq
3849 nt
NT seq
+upstream
nt +downstream
nt
atgcctgctgaacgcaagcacgcagtaaacatggacgagaaagacatttgctccgccagc
agcaaggacaaggacaaagaaaaggacgcagagaggaaagcagcagcagcagcagcagca
gcgcgggacaaagccaaagacgaggccaagatgagtggcaagaaggacggcggcaaagat
gagaagaggaagcgccaggaggaggagaagaagaggaaagaggagaaggagcgcaggaag
aaagaggaagagaaacagaaagcggaggaagagcagaagcagaaggaggaggaggtgaag
aggcagcaggaggagcaggagaggaagcttcaagaggaggaggccaaaaggcagcgtgag
gaggaagcggctatcctgaaggaacaggaagagggccaccagctgcaccaggaggcgtgg
gagcgccaccactgccggaaggaactacgcggcaggaaccagaacgcccacgaggcccgg
cccgaagaagccttcttcacccggctggactccagtctcaagaagaacacggctttcgtc
aagaagctgcgcacgctcaccgagcagcagcgcgactcgctctccaacgacttcgcctcg
ctcaacctcagcaagtacatcggcgaggcggtcagctccgtggtggaggccaagctgaaa
atctccgacgtgggcagcgccgtgcacctgtgctcgctcttccaccagcggtacggcgag
ttcgccccgctgctcctgcaagcctggaagaagcacttcgaggcccgcaaggaggacaag
gtgcccaacgtcagcaagctgcgcaccgacctgcgcttcctggccgagctcaccatcgtg
gggttcttcaccgacaaagagggcctgtcgctcatctacgagcagctgaagaacatcatc
ggcgccgaccgcgagacgcacacgcacgtgtcggtggtcatcagcttctgcaagcactgc
ggggacgacatcgccggcctgctgccgcgcaaggtcaaggcggccgccgacaagtacggc
ctggccttccctcccagcgaaatcatcagcgccgagaagcagcagcccttccagaatctg
ctgcgcgagtacttcacgtcgctcgccaagcacctgaagaaggaccacagggagctgcag
aacattgaaaggcagaacaggcgcatcttacattccaaaggggagctgagcgaggaccgc
cacaagcagtacgaggagtttgccacgtcctatcagaagctgctggccaacactcagtcg
ctggctgacctgctggatgaaaacatgccagagttgccccaggacaagaccgtgcaggaa
gaacacggccccggcattgatatttttacccccggcaagccgggagagtacgacctggag
ggcggcatctgggaggacgaagacgctcggaacttctacgagaacctggtggacctgaag
gcgttcgtccccgccatcctcttcaaggacaacgagaagggcggccagggcaaagacaag
gatgaagccaaagcagatggccgagagccaagggaggccgccggcaccacggaagagctg
gaactggagctggaggctctggacatcgcagacgagcctctggaactggagggagccgac
gaggccgagagtgaagaactggccaaaaagctcatggatgagcaggagcaagaggacgag
gaggccaacacgggatcccacctgaagctgatcgtggacgcgttcatccagcagctccca
aactgcgttaaccgagacttcatcgacaaggccgccatggacttctgcatgaacatgaac
accaaatccaacaggaggaagctagtgcgagcgctcttcacggtgccccggcagaggttg
gatcttctgcctttttactcccgcctggtggccacccttcatccgtgcatgtcggacgtg
gccgaggacctctgctccatgctgaaaggggacttcaggtttcatattcgcaagaaggac
cagatcaacatcgagaccaaaaataaaaccgtcaggtttattggggaactggccaagttc
aagatgttctccaagacggacacgcttcactgtctcaagatgctgctgtccgacttcacg
catcaccacgtggagatggcgtgcaccctgctggagacttgcggccgcttcctcttcagg
tctcccgattctcacctgcgcaccagcgtcctgctggagcaaatgatgcgcaaaaagcag
gctcagcacctggacgcgcgctacgtgaccatggtggagaacgcctactactactgcaac
cccccgcccatggagaagacagtgaagaagaagcggccgccgctgcaggagtacatccgc
aagctgctctacaaggacctgtccaaggtcaccacggagaaggtgctcaggcagatgcgc
aagctgccctggcaggaccccgaggtgaagagctacctgatctgctgcatggtcaacatc
tggaacgtcaagtacaacagcatccactgcgtggccaacctgctggccggcctggtggcc
taccaggaggacgtgggcatccacgtggtggacggggtgctggaggacatccgcctgggc
atggaggtgaaccagcccaagttcaaccagcggcgcatcagcagcgccaaattcctgggc
gagctgtacaactaccgcatggtggagtcggccgtcatcttccgcacgctcttctccttc
atctcgttcggtgtcagtcaggacggcagccccagctcgctggacccccccgagcacctc
ttccgcatccggctggtgtgcacgctgctcgacacctgcgggcagtacttcgaccgaggc
tccagcaagaagaagctcgactgtttcctcatctacttccagcgctacgtctggtggaag
aagagcgtggaggcctggaccaaagagcaccccttccccatcgacatcgactacatgatc
agcgacactctggagctgctgcggcccaaaatgaagatcagctcttccctggaggaggcc
accaggcaggtggtggacctggagagggaggtgctcgtcaaactaggtctggccatggag
aggggtggccgttccagcgcggtgagcgaaggcgagggcctggacgaggaggacgacgac
gaagacgaggagggcggcgccgagacggaggagcagtcgggcaacgagagcgaaatcaac
gaacccgaggaggatgaggcatctgagaatgaagacgaggagagggatgaagaggaggag
gagaacaccgactacctgacagactccaacaaagaaaatgagacggatgaggagaacaat
gaggtgaccatccgtggcggcgggttgaagcacgtggcgtgtgccgaggacgaggacttc
atccaggcgttggataagatgatgctggagaacctgcagcagcggagcggcgagacggtg
aaggtgcaccagctggacgtggccattcctctgcagctgaagagccagctgaggaaggga
ggctcctccagccagccatccatcagcgaggccgacgccgacgtctcggacaccatgcag
ttcgtcatgctcacgcgcaagggcaacaagcagcagtacaagatcctgaacgtgccgctg
tcgtcccacctggccgccaaccacttcaaccagcagcaggccgaacaggaggagcgcatg
aggatgaagaaactcaccctggacatcaacgagcgccaggagcaggaagactaccaggag
atgttgcagtccctggcccagcgtccggcgcaggccaacaccaaccgcgagcggcggccc
cgctaccagcaccccaaaggcgcccccaacgccgacctcatcttcaagaccggaggaagg
agacgctga
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