Phycodurus eques (leafy seadragon): 133397789
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Entry
133397789 CDS
T09682
Symbol
col4a5
Name
(RefSeq) collagen alpha-5(IV) chain isoform X1
KO
K06237
collagen type IV alpha
Organism
pee
Phycodurus eques (leafy seadragon)
Pathway
pee04382
Cornified envelope formation
pee04510
Focal adhesion
pee04512
ECM-receptor interaction
pee04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
pee00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
133397789 (col4a5)
09140 Cellular Processes
09144 Cellular community - eukaryotes
04510 Focal adhesion
133397789 (col4a5)
09142 Cell motility
04820 Cytoskeleton in muscle cells
133397789 (col4a5)
09150 Organismal Systems
09158 Development and regeneration
04382 Cornified envelope formation
133397789 (col4a5)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
pee04147
]
133397789 (col4a5)
00536 Glycosaminoglycan binding proteins [BR:
pee00536
]
133397789 (col4a5)
Exosome [BR:
pee04147
]
Exosomal proteins
Exosomal proteins of other cancer cells
133397789 (col4a5)
Glycosaminoglycan binding proteins [BR:
pee00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
133397789 (col4a5)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Collagen
C4
Motif
Other DBs
NCBI-GeneID:
133397789
NCBI-ProteinID:
XP_061525080
LinkDB
All DBs
Position
23:complement(3521056..3546754)
Genome browser
AA seq
1722 aa
AA seq
DB search
MPQPPHLAPLDAEEQRLYSELLPDDRASHPFSKGEPRHPAEKTHFGHLYPGSCSFGQDPE
LVTIDGAPIRLSICRSIFPSLVNKTPRYLNSSTWGRISSPTWRGRATLFRLRTTVSDLEG
SDGPMGFGGPKGIRGPPGLPGFPGTPGLPGLPGQDGPPGPRGTPGCNGTKGEIGYPGVSG
IPGQQGLSGPPGLPGQKGDPGDVISTNRFGDQGAVGFPGLPGVPGPPGPGGYQGPIGPPG
PRGFEGRPGPPGPPGPKGNMGLNFQGPKGEKGDPGLPGPAGPPGQVGEQKRPTETEIQRG
DKGDPGLPGTQGDPGYPGPPGTPGGQKGEKGEPGEAGKRGKPGKDGDPGPPGFLGLKGES
GLPGPPGRDGERGMKGERGFPGAPGVVISGQTGAQVGPKGEPGFPGSPGVKGDRGLIGLT
GPPGAPGIPGGGGGGSPGLPGFPGERGQKGDTGNLGLSLPGPPGRPGGPGLQGQPGPPGP
PGFSTGGQNCIAGEPGRAGLPGERGYPGVAGQKGEKGDTCVNCFSGTSGIPGSPGPAGQP
GFPGNPGAPGIKGERGFPGTPGANGPPGQPSAQGPPGFPGEKGDPGEAISGGGARGEKGD
TGFPGAPGLPGLDGRPGRDGQPGFPGPKGAPGSLQVRGERGSPGEPGPNGIAGDRGPPGP
PGFGPPGSPGEKGIQGVSGRPGAPGIPGAKGESGLSVAEKGQPGQRGLDGEPGRPGAPGN
PGQPGQPGFPGLPGGKGDPGLPGIGLPGPPGPKGFAGVPGQPGGPGGLGRPGVDGLPGQP
GFPGAKGEPGFGLPGPPGFPGVPGAKGVTGTKGDPGFPGGPGSPGRSGFDGPPGPKGEPG
TSGLPGSIGPPGPPTAGSRGPSGNPGLPGPMGPPGFTGGNGAKGDPGPPGLDIPGLPGDR
GSPGFPGSPGPIGTPGPPGGPGQDGFPGLPGAKGDMGPTGSPGPAGGPGGPGAPGAVGLK
GESGFPGRDGAPGFAGAKGERGSSGLPGPPGYSPPPISSKGDKGEPGLPGAPGFPGQKGI
PGITGDPGLPGSDGRPGLPGPSGPKGDPGIPGGPGGPGAPGPKGTMGEMGFPGPSGQKGL
LGQTGRPGTPGQPGGPGFSGAKGEPGSAGVGPPGPPGVKGDPGQSGFPGGPGPKGTPGLP
GLSGLPGAPGAKGDLGPPGFQGSPGIPGPKGLDGGPGGPGLTGAPGRPGEPGRPGAPGFP
GEKGQAGRDGIPGPAGVKGEPGPPGYGEPGSSGLPGLPGGKGDPGPSGPSGSPGFPGPKG
DSGFPGLPGSSGPIGQPGPPGLALQGPKGLTGPPGPPGRGGVPGPQGPRGPSGSGGIRGE
KGIPGAAGQPGFPGQKGDPGIPGFSGPPGTPGVPGAKGDIGLPGVPGFPGPKGDPGLHGG
SGLPGDPGDLGPPGPPGDPGVPQPPIMFKGERGPPGPLGQPGAGGLPGSPGREGLQGQPG
DPGDSGLEGPPGFSGPPGRKGDNGPAGQPGQRGYPGPPGSDGPQGPPGLPGSGSAAHGFL
ITRHSQIQEVPLCPIGTNLIYDGYSLLYVQGNERAHGQDLGTAGSCLRRFSTMPFMFCNI
NNVCNFASRNDYSYWLSTPEPMPMSMAPITGESIKPFISRCSVCEAPAMVIAVHSQTIQI
PNCPANWEALWIGYSFMMHTSAGAEGSGQALASPGSCLEEFRSAPFIECHGRGTCNYYGN
SYSFWLATVDEGEMFSKPQSETLKAGNLRTRVSRCVVCMKKT
NT seq
5169 nt
NT seq
+upstream
nt +downstream
nt
atgccccagccacctcatctggctcctctcgatgcggaggagcagcggctctactctgag
ctcctcccggatgaccgagcttctcacccgttctctaagggagagcccagacaccctgcg
gagaaaactcattttggccacttgtatccgggatcttgttctttcggtcaggacccagag
cttgtgaccatagacggtgcaccgatccgcctgtcaatctgccgttccatttttccctca
ctcgtgaacaagaccccaagatacttgaactcctccacttggggcaggatctcatccccg
acctggagagggcgcgccacccttttccgactgaggaccacggtctcagatttagagggt
agtgatggaccaatgggatttggtggcccaaaaggaataagaggacctcccggattgcca
ggattcccaggaacaccaggacttccaggtctcccagggcaggacggacctccaggccca
agaggaacaccaggttgcaatgggacaaaaggtgaaatagggtacccgggagtatcggga
atcccaggacagcaaggactgtcgggtccacctggtcttcctggacagaagggcgatcct
ggtgacgtgatctccactaatcgttttggggaccaaggagctgtgggctttcctggactg
ccaggagttcctggtcctccaggacctggtggctaccaaggtccaatcggcccgccggga
ccgagaggctttgagggtcgaccaggtcctccaggccctcctggacctaagggcaacatg
ggactaaacttccagggacccaaaggagagaagggtgaccctggtttacccggacctgcc
gggcctccagggcaagtcggggagcagaagaggccaaccgagacagagattcaaagagga
gacaagggcgacccaggacttccaggcacccaaggtgatcctgggtatccaggtccgcct
ggtacccctggtggccagaaaggagaaaagggagaaccaggagaggcaggcaaacgtgga
aaaccaggcaaagatggtgacccaggtccgccgggatttcttggtctcaaaggagagtca
ggcctgccaggtcccccgggcagagatggagagagaggcatgaaaggtgaacgtggattt
ccaggtgctccaggagtggttattagcggacagacaggagcacaggtgggtccaaaaggg
gagcccgggttccctggatcacctggcgtcaaaggagatagaggactaatagggttaaca
ggacctccaggagcaccaggaattccaggcggtggtggtggcggttcacctggacttccg
ggcttcccgggagagagaggtcaaaagggagacaccggcaatttggggctctctctccca
ggtcctccgggccgccccggagggcctgggttgcaaggacagccaggaccccctggacct
ccaggtttttccactggtggacaaaactgtatcgctggcgagcccggacgtgctggccta
ccgggagagaggggttacccgggagtggcgggccagaaaggtgaaaagggggacacctgt
gtcaactgctttagtggcacaagtgggatccctgggtccccaggacctgcaggacaacct
ggattcccaggaaatcctggtgccccaggtattaaaggagaaagaggattcccaggaaca
ccgggtgcaaatggaccacctggtcagcccagtgctcaaggtcctccaggattcccggga
gagaagggagacccaggtgaagcaatctctggtggcggtgcgaggggtgagaagggggac
actggattccctggagcgcctggtcttccaggtctagatgggcgtcctggtcgcgatgga
cagcctggatttccagggcccaaaggagctcctggatctttgcaggtcagaggagagcga
gggagccctggtgagccaggtcccaatgggattgcaggagatcggggtcctccaggcccc
ccaggctttggacctcctggatctcccggagaaaagggtattcagggtgtttcgggaagg
cctggagctcctggtatacctggtgccaaaggtgagtcaggcttgtcagtggcagaaaaa
ggccagcccgggcagagaggtctggatggtgagccgggacgtcccggtgcaccaggaaac
ccaggtcagcctggtcagcctggtttccctggattaccgggaggaaaaggtgaccctgga
ctgcctggtattggactccctggaccccctggacctaaaggatttgctggtgtccctggc
caaccaggaggtccgggaggactaggaagaccaggagtagacggccttccgggccaacct
ggatttcccggggcaaaaggtgaacctggctttggactccccggtcctccaggtttccca
ggtgtacctggagctaaaggtgtcaccggaaccaagggagatcctggtttccctggaggc
cctggctcacccggccgatctggatttgacggcccaccaggccctaaaggtgaaccagga
acatctggtctcccaggatccattggcccaccaggacccccgacggcaggctcacgcggc
ccctcagggaaccctggactcccaggcccaatgggtccacccggattcaccggaggaaat
ggagcaaaaggagaccccgggccaccaggtttagatattccaggcctgccaggagataga
ggaagtcctggtttcccaggttccccaggaccgattggaaccccaggaccccctggaggc
cctggacaggatggctttcctggactgccaggtgccaaaggagatatgggtcccactgga
tctcccggaccagctggaggacctggtggccccggggcaccaggtgctgttggactgaaa
ggtgaatcaggattccctggtagggatggtgctcctggctttgctggagctaaaggagag
cgggggagcagtggccttccaggacctcctggatacagcccaccacctatttcctcaaag
ggtgacaaaggagaaccaggactaccaggagcaccaggttttccaggccaaaagggcatc
cctggcatcactggtgaccctggacttccaggatcagatggacggcctggacttcctggt
ccatcaggaccaaagggagatcctggcattccaggaggacctggtggtcctggagctcct
ggaccaaaaggcaccatgggagaaatgggatttccaggaccatcagggcagaagggtttg
ctgggccaaacgggtcgacccggaactccaggccagcccggaggacccggtttctcagga
gccaaaggtgaaccaggttctgctggggttggaccgcctgggccacctggagtcaagggt
gatcccgggcagtcaggtttccctggaggcccagggcctaaagggactccaggattacca
ggtctgtcgggattacctggagcaccaggtgccaaaggtgatctgggtccgccaggattc
caagggtctcctggtattcctggtcctaagggtctcgacggcgggcccggtggcccaggc
ctgaccggagctcctggaagaccaggagagcctggccgaccaggagcacctggatttccg
ggagagaagggtcaagcgggtcgggacgggatccccgggccggctggtgttaaaggagag
ccagggcctccaggctatggtgaaccaggatcctctggacttccaggattgccaggtggc
aagggagaccctggtccctctggcccatctggcagtcccggtttccctggtccaaaagga
gatagtggcttccccggccttccgggctcttcaggccctatcggccaacctggacctcca
ggtctggctctacagggtcccaaaggattgaccggaccccctggaccaccaggaaggggt
ggtgtgcctggcccacaaggtcctcgtgggccctcaggaagtggtggcatcaggggagag
aaaggtattcccggtgctgctggacagccaggctttcctggtcagaaaggagaccctggc
attccaggattctcaggtccgcctggcactcctggtgttcctggtgctaaaggcgacatc
ggtctgcctggggttcccggatttccaggaccaaagggagacccaggacttcacggtggc
tctgggcttcctggtgatcctggagatctcggacctccaggcccccctggtgaccctggt
gttcctcagcctcccattatgtttaagggagagcgtggaccccccggtcctctgggccag
cctggtgctgggggactgccaggcagccctggacgtgaagggctccaaggtcagccaggt
gacccaggtgattctggtctagagggtccccccggtttcagcggcccccctggaagaaag
ggagacaatggtcctgctggtcagcctggtcagcgtggctacccaggtcctcctggttct
gacggtccacagggtcctcccggtcttccgggttcgggctcggcagcccacggcttcctc
atcacccgacacagccagatccaggaagtaccgctctgcccgatcggaaccaacctcata
tacgacggctactccctgctgtacgtgcagggcaacgagagggcgcacgggcaggacctt
ggaacggcaggcagctgtctgcgccgcttcagcaccatgcccttcatgttctgcaacatc
aacaatgtgtgcaacttcgcctcccgtaacgactattcctactggctgtccacgcccgaa
cccatgcccatgtccatggcccccatcactggcgagagcatcaagccttttatcagccga
tgctcggtgtgtgaagctcccgccatggtgatcgcagtccacagtcaaaccatccagatt
cccaactgccctgccaactgggaggctctgtggataggttactccttcatgatgcacacc
agcgccggcgccgagggctccggccaggccctggcctctcccggttcttgtctggaggag
ttccgcagcgctccctttatcgagtgccacggcaggggaacgtgcaactactacggcaac
tcctacagcttctggctggccaccgtggatgaaggcgagatgttcagcaagccccagtcg
gagacgctgaaggcgggcaacctgcggacgcgcgtcagccgctgcgtggtctgcatgaag
aagacgtaa
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