Phycodurus eques (leafy seadragon): 133397790
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Entry
133397790 CDS
T09682
Symbol
col4a6
Name
(RefSeq) collagen alpha-6(IV) chain isoform X1
KO
K06237
collagen type IV alpha
Organism
pee
Phycodurus eques (leafy seadragon)
Pathway
pee04382
Cornified envelope formation
pee04510
Focal adhesion
pee04512
ECM-receptor interaction
pee04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
pee00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
133397790 (col4a6)
09140 Cellular Processes
09144 Cellular community - eukaryotes
04510 Focal adhesion
133397790 (col4a6)
09142 Cell motility
04820 Cytoskeleton in muscle cells
133397790 (col4a6)
09150 Organismal Systems
09158 Development and regeneration
04382 Cornified envelope formation
133397790 (col4a6)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
pee04147
]
133397790 (col4a6)
00536 Glycosaminoglycan binding proteins [BR:
pee00536
]
133397790 (col4a6)
Exosome [BR:
pee04147
]
Exosomal proteins
Exosomal proteins of other cancer cells
133397790 (col4a6)
Glycosaminoglycan binding proteins [BR:
pee00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
133397790 (col4a6)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Collagen
C4
Motif
Other DBs
NCBI-GeneID:
133397790
NCBI-ProteinID:
XP_061525083
LinkDB
All DBs
Position
23:3547554..3591842
Genome browser
AA seq
1710 aa
AA seq
DB search
MKLLFCVAAVVVAVRSTHAGDNSNELCSGLDCSGGCRCNPEKGARGHPGPLGEVGQSGAE
GPRGSPGPVAPKGEKGHIGLKGPSGPKGDKGPMGVPGFQGNDGVLGHTGQQGGRGPPGLD
GCNGTRGEPGYPGYGTGGPGQPGFAGPIGPKGQKGEPRYITDGGVTRLPGLPGEDGRPGT
RGPDGPVGFAGPPGPEGYPGPPGPPGSPGPMGSRSDGYQGEKGDKGDLGLPGPSGTPGDG
SLRSEQTLTIYKGDKGEPGPKGIRGFAGNRGPPNPFGFRGEFGEKGIPGYPGARGPPGFN
GPPGLPGQQGYRGTPGFPGQPGYGGPKGDQGEPGLPGPPAFVSGPGTSVQGPPGEPGFNG
LPGAPGDQGPPGFPGPPGPPGFGGFGSDRPASSGFPGTPGPKGEKGSPGVPGYGTEGLPG
SPGLPGIPGPPGPQGLSSRPVEPCVIYHEGEKPTVSPGASVPGVPGLPGPRGPSGERGYK
GFRGDPGDCNCIGGGSSGLPGPPGSPGANGSPGFTGPKGESGDAGSPGFGGLQGPPGRAG
ERGFLGRKGEKGVSYYTTFGFGVKGELGATGPRGPTGETGTPGRDGSPGFPGPPGPPGDA
GIGTRGDRGFPGFPGSKGRPGGPGEPGAGFAGTPGFRGEPGEPGFSGLPGPPGLPGPRGE
NSCGEVIDSEEGTGQVLPCTIPGEVGLPGFPGVPGRPGPKGQPGLPGGPGRPGFDGAKGE
RGEPGFGGQPGPQGFPGPRGDGGVPGSPGQSFDGSRGKDGVPGRPGAKGQPGEVLGATAG
PPGRDGFPGVPGDKGQPGTPGGAGPPGLNGRSGIPGRQGERGVDGFPGLPGPPGLPGDPT
VEVPGPPGIDGSNGPRGSPGFPGRKGDRGDPGFPGPAGMKGTPGLPGTPGSPGSRGAPGP
PGPGTRVGLPGIPGRKGERGFPGLTGFPGQPGRPGNPGFPGGKGVPGGPGRDGLSGGPGY
TGQKGEPGLPGPAGPPGPPVSVVSGGRGDPGTPGGSGLPGFTGPRGDKGLPGQPGRQGLP
GLPGFAEQSKGQPGQPGFPGQPGFPGGPGPKGEAGILGFPGMSGPRGDDGLPGIPGNPGQ
PGRPGTKGQPGESFGFPGAPGFKGQPGDSGFPGGRGNNGAPGDDGFPGSPGFPGVKGGPG
EAGLPGIMGSPGYPGPKGQSGFPGPRAPDGTPGSPGGPGGPGPKGLPGSPGLDGLNGLRG
PKGLPGTPGASGRARQGAPGIPGLKGERGVSYPGTPGFPGQKGERGESGGPGLTGFPGRP
GLPGRSVGSDIPGPLGDPGLPGLDGEFGLTGPPGPPGPPGPGTDQGERGDPGLPGYPGTP
GRKGEPGIPGGPGISGSPGFKGLQGDTGFSGGPGLKGFSGDPGYYGSKGAKGFRGPAGPK
GRPGITLPGTFQQFERPFGDGGPPGGPGPRGFSGVPGQPGMPGHPGSKGRPGSVGKLGRT
GSVGLPGPVGDPGPPGFPGPTGEQGLPGTVGRPGGPGSVGRSISIGYTLVKHSQNVQVPM
CPQGMAKLWDGYSLLYVEGQEKAHNQDLGQPGSCLPRFSTIPFLYCSPNEVCYYASRNDK
SYWLSTTAPIPMMPVAQIQIRPYISRCSVCEAPSQAVAVHSQDLTIPNCPPGWRSLWIGY
SFLMHTAAGAEGGGQSLVSPGSCLEDFRATPFIECNGAKGTCHYFGNKYSFWLTTVDPNG
EFVYSPAQETLKGGQERSKVSRCQVCSKVL
NT seq
5133 nt
NT seq
+upstream
nt +downstream
nt
atgaagctcctgttttgcgtggcggcagtcgtcgtggcggtgagatctacccacgcaggg
gacaattctaacgagctgtgttccggtttggactgcagcggaggatgcaggtgcaacccg
gaaaagggagccaggggtcatccggggcctctcggcgaggtcgggcagagtggggcagag
gggccccgcggcagccccgggcccgtagcgcccaaaggtgaaaagggccacattggcttg
aaaggaccatccggccccaaaggagacaaaggaccaatgggagtacctggatttcaagga
aacgatggcgtccttggtcacaccggtcagcagggtggcagaggaccaccgggactggac
ggctgtaacgggaccagaggggagcccgggtatcctggctacggcaccggcggccccggg
caacctggttttgcaggacccatcgggccgaagggtcagaaaggagaacctcgatacatc
actgatggcggcgtcacccgtttacctggccttccaggagaagacggtcgccccggcacc
agaggtcccgatggtccagttgggtttgctggtccacccgggccggaaggatatcccggc
ccacccggtcctcccggttcaccagggccgatggggagtcgtagtgatggatatcaaggc
gagaagggagacaagggcgacttgggtcttccgggaccgagtggtactccaggtgacgga
tctctacgaagtgaacaaaccctcacgatctacaaaggagataagggtgaacctggaccg
aaggggattcgtggattcgctggaaaccgtgggcctcctaacccttttggtttccgcggg
gaatttggagagaaaggaatacccggatacccaggggcgagaggtcctccgggttttaac
ggacctcccggcctgcctggacaacagggatacagagggactccaggattccccgggcaa
ccaggatacggcggacccaagggagaccagggagaacccggactcccaggacctcccgct
tttgtcagcggtccaggcacttctgttcaaggaccgccaggtgaaccaggctttaacggg
cttcctggtgcacccggtgaccaaggacctcccgggtttccaggcccaccaggtcctccg
ggatttggggggtttggttccgatcgtcccgccagctcgggtttcccagggaccccgggc
ccgaagggggagaaaggtagccccggcgtgcctggctacggcacagaaggactcccgggc
tcccctggacttccagggattccagggcctcctggacctcagggcctctccagccgaccc
gttgagccctgcgtcatctatcacgagggggaaaagcccactgtttcacccggcgcgagc
gttccgggggtcccggggctgcccggtccccggggaccgtcgggagagcgaggatataaa
ggtttcagaggggatcccggtgactgcaactgtatcggcggcggctcctcggggctgccc
gggccacccggatctcccggtgccaacggcagccccggcttcactgggccaaagggggag
tctggtgacgcgggctcacctggcttcggtggccttcagggacctcctggccgcgccggc
gaacgtggtttccttggccgcaagggagaaaagggggtgtcttactacaccactttcggt
ttcggagtgaagggagagctcggagctactgggcccagaggacccaccggagaaacgggt
acaccgggcagggacggatcgccgggcttccctggaccccccggtcccccaggggatgcc
ggcattggcacgcgcggagacagaggtttcccgggcttcccgggatccaaggggcggccc
ggagggcccggcgagcccggcgccggctttgccggcacgcctggtttccgaggcgagccc
ggagaacccggtttttccggactgccggggccaccaggtttgcctggaccaagaggcgaa
aacagctgtggagaggttattgacagcgaagagggaacgggccaagtgcttccctgcacc
atccccggtgaggtcggactgcccggttttcccggtgtacctggacgaccaggtcccaaa
ggtcagccgggcttgccgggaggccctggacgtccaggatttgacggcgcaaaaggagag
agaggagagcccggctttggagggcagcccggaccgcaaggtttcccgggacccagaggg
gacggcggagttcccggtagcccgggacaaagttttgacgggagcagggggaaggacggt
gtcccgggacgccctggagccaaaggccagcctggagaagtcctgggagccacagcgggg
cctccgggacgagatggttttcccggagtccccggagacaagggccagcccgggacaccg
ggaggggccggaccacccggtcttaacggacgctcgggtattcctgggcgtcagggcgaa
cgaggagttgatggttttcctgggctccccggtcctcctggactcccaggcgatccaacc
gtcgaagtccccggcccgcctggaatcgatgggagcaatggccccagaggctcaccaggt
tttcctggtcgaaaaggagacagaggagaccccggtttcccaggacctgctggtatgaag
ggcaccccaggactaccgggtacccctggctcaccggggtcgaggggagcacccgggcct
ccgggaccaggaacaagggtgggattaccgggaataccaggaaggaagggtgagcgaggt
ttcccagggttgacgggcttccccggacaaccgggacgtcctggaaatccaggatttcct
gggggtaaaggagtgcccggggggcctggaagagatggactttctggggggcccggctac
actggacagaaaggtgagccagggttacccggtcccgccggcccgcccggccctccggtt
tcagttgtgtctggaggcagaggagaccccggaacccctggaggcagtggccttcctggc
ttcaccggaccaagaggtgacaaagggcttccaggccagccgggtcgtcagggtctgcct
ggacttccgggttttgccgaacagagtaaagggcagccgggacaacctggtttcccaggg
cagccgggatttcccggcggcccaggtcctaaaggtgaagctggaatcctgggattccct
ggcatgtctggaccaaggggagacgacggcttacctggtatccctggcaatcctggacag
cctggtcgtcccggtaccaagggtcagcctggagagtcttttggctttccaggagcgcca
ggctttaaagggcagcccggagattcaggatttccaggtggtcgtggcaataatggcgct
cctggtgatgacggcttcccaggaagtcctggtttccctggagtcaagggaggacctgga
gaagctggattgcctggaataatgggttcacctggttaccccggaccaaaaggtcagtct
ggtttccccggaccaagagcgccagatggaacccctggttcgcccggaggcccaggaggt
cccggacctaaaggtcttcctggatctcctggtttggacggccttaacggcctccgtgga
cctaaaggccttcctgggacacctggggcgagtgggagagcgcgccagggtgcccctggt
attccgggcttgaagggcgaaagaggagtctcctacccaggaacaccaggtttcccagga
cagaagggagagagaggagagtcaggtggtcctggactcacaggatttccgggtcgacct
ggactccccggtaggtcagttggctcagacatcccagggccattgggagatcccggcctc
cctggactggatggagagttcggtttgaccggtcctccgggccctcctgggccacccggc
cctggcacagaccagggagaaaggggtgatcctgggctcccgggttaccctggaacccct
ggcaggaaaggagaaccagggatccccggaggccccggaatctcgggcagtcctggcttc
aaaggactacaaggggacactggattcagcggcggtccaggtcttaagggtttttctggt
gacccaggctattacggaagcaaaggagccaagggcttccgaggccctgcgggtccgaag
ggtcgccccggtatcacactccccgggacatttcagcagtttgagcgacccttcggagac
ggcggtcctccaggtggacctggaccccgtggtttctctggagtgcccggtcagcctggg
atgcctggacatccaggttcaaagggacgtcccggttctgttggtaaactgggccgcact
ggttctgttggtctgcctggaccagttggtgacccgggtcctccgggtttccctggaccc
actggagaacaaggccttcccggtaccgtcggtcggcccggcggtcccggctccgtgggg
cgcagcatcagtatcggctacactctggtgaagcacagccaaaacgtgcaggttccaatg
tgtcctcagggcatggccaagctgtgggacggttacagcttgctttacgtggagggtcaa
gagaaggcacacaaccaggacctcggtcagccggggtcctgcctacccaggttcagcacc
atccccttcctctactgctcccccaacgaagtgtgctactacgccagccgcaatgacaaa
tcttactggctctccaccaccgcgcccatccccatgatgcccgtggcccagattcagatt
cggccttacatcagcaggtgttcggtgtgcgaggcgccgtctcaggcggtggcagtccac
agtcaggacttgaccattcctaattgcccccctggctggaggagtctctggataggctac
tccttcctcatgcacacagcggccggggccgaaggcggcggccagtccctggtgtccccc
ggctcgtgcctggaagatttccgggcgacgccgttcattgagtgcaacggcgccaaaggg
acgtgccattacttcggcaacaagtacagcttctggctgaccacggtggatcccaacggc
gagtttgtctactcgccggcgcaggagaccctgaagggaggccaggagcgctccaaagtc
agccgctgccaagtgtgcagcaaggtcttgtag
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