Phycodurus eques (leafy seadragon): 133401544
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Entry
133401544 CDS
T09682
Symbol
smarcc1a
Name
(RefSeq) SWI/SNF complex subunit SMARCC1 isoform X1
KO
K11649
SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily C
Organism
pee
Phycodurus eques (leafy seadragon)
Pathway
pee03082
ATP-dependent chromatin remodeling
Brite
KEGG Orthology (KO) [BR:
pee00001
]
09120 Genetic Information Processing
09126 Chromosome
03082 ATP-dependent chromatin remodeling
133401544 (smarcc1a)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
pee03021
]
133401544 (smarcc1a)
03036 Chromosome and associated proteins [BR:
pee03036
]
133401544 (smarcc1a)
Transcription machinery [BR:
pee03021
]
Eukaryotic type
RNA polymerase II system
Coactivators
BAF/PBAF complex
133401544 (smarcc1a)
Chromosome and associated proteins [BR:
pee03036
]
Eukaryotic type
Chromatin remodeling factors
BAF complex
133401544 (smarcc1a)
PBAF complex
133401544 (smarcc1a)
GBAF(ncBAF) complex
133401544 (smarcc1a)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SWIRM-assoc_2
SWIRM-assoc_3
SWIRM
SWIRM-assoc_1
Myb_DNA-binding
Myb_DNA-bind_6
HEAT_GCN1
Chromo
Motif
Other DBs
NCBI-GeneID:
133401544
NCBI-ProteinID:
XP_061530657
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All DBs
Position
4:22636757..22661528
Genome browser
AA seq
1118 aa
AA seq
DB search
MATAATTASGPTTGPVGGGSGGGTAVGRKKDGGPSAKFWESSETVSQLETVRLWIGKHYK
KYVQNDSPTSKSLAGLVVQLLQFQEDSFGRKVNNPALTKLPAKCFLDMKAGGALCHILGS
VYKFKSEQGWRRFDLQNPSRMDRNVEMFLNVEKNLVQNNCLTRPTVILSPDMEAKQVSKL
KDAIKRHQGSITEDKSKATHLIFPTPSQQDEEEWLRPVMRKDKQVLVHWGHYPDSYDTWM
AAGEVDGDVEETPSTDRPWKVHARWVLDTDAFNEWMNEEDYEVDDNKKPVSFRQKIFLKE
EESSSRTPDRKERKANSTGKKRRRSPSPPTTPAESRKKGGKKGNQGHYWKRRGHRGEEED
TEDDVTKDLDDSSAGASMEEGSVSKNAHSKKDSESTPLKGDNGADLDDMEDDSVVSGGKE
DEDQNKAEISRLMDSGEDNVTEQTHHIIIPSYSAWFDYNCIHEIERRALPEFFNGKNKSK
SPEIYLAYRNFMIDTYRLNPQEYLTSTSCRRNLTGDVCAIMRVHAFLEQWGLVNYQVDSD
SRPLPMGPPPTPHFTVLADTPSGLMPLNHRPPPIPPSQQMANFPDKMKDKAIDLQNFGLR
TDQYKKNSKGKSVVSSREWTEQETLLLLEALEMFKDDWNKVSEHVGSRTQDECILHFLRL
PIEDPYLESSETSLGPLAYQPIPFSQSGNPVMSTVAFLASVVDPRVASAAARAALEEFSR
VREEVPAELVEAHVKKVQEAARSTGKVDPAFGLESSGIAGTAPEEPEKTGESQAAEGDKT
ETDTDSQQGDKAESKDEAEKPNESAEKSGKMEAAEKVKKEIVEVLEREDESEEGHEAKAT
PADKDEDESMETSSSEQEKDEKATTEEGEEKRKKMENDIGEGNIATAAAAALASAATKAK
HLAAVEERKIKSLVALLVETQMKKLEIKLRHFEELETIMDREKEALELQRQQLLTERQAF
HMEQLKYAEMKARQQMEQQAAAAAAAAAAAQSQGHVPGAGHHPGPAGMHPGGPPPHHGGP
QPGAAMHPSYPPMGHHPMAPHHPGQIAPMGPGQPLPGRMLAGPPTAGPPPGGIPPMMPPR
HPGAPNGMYPGPASAQPEAVPPLPVGPPAPSGGRAADN
NT seq
3357 nt
NT seq
+upstream
nt +downstream
nt
atggcgacggcggcgaccacggctagcgggccgaccaccggccccgtcggtggaggcagc
ggcggtgggaccgcggtggggcgcaagaaagacggcggcccatccgccaaattctgggag
agttccgaaactgtttcccaactggagactgttcgtctgtggatcggcaagcactacaag
aagtatgtccagaacgactcgcccactagcaagtccctggctggcctggttgtgcagctg
cttcagttccaggaggactcttttggacgcaaagtcaacaatccagctctcaccaagctg
ccggccaaatgcttcctggacatgaaagcggggggtgcgctctgccacatcctgggatcg
gtctacaagttcaagagcgagcagggctggcgccgctttgacctgcagaacccttcccgt
atggacagaaatgtggagatgttcttgaacgtggagaagaacttggtgcagaacaactgc
ctgacgcggcccactgtcatcttgtctcccgacatggaggccaagcaagttagtaagctc
aaagatgccattaaaaggcaccagggttccatcactgaggacaagtccaaggccacccac
ctcattttcccgactccgtcgcagcaggacgaagaggagtggctgcgtcccgtcatgagg
aaagacaagcaggttctggttcactggggtcactacccagacagctacgacacctggatg
gcagctggcgaggtggacggcgacgtggaggagacgcccagcaccgaccgaccgtggaag
gtccatgccaggtgggttctggacacggacgccttcaacgagtggatgaatgaggaagac
tacgaggtggatgacaataagaagcctgtcagcttccgccagaagatcttcttgaaggag
gaagagtcgtcttcccgtacgcccgatcgcaaggagcgcaaggccaactccaccggcaag
aagaggaggcgctcgccctcccctcccaccacgcctgccgagtcccggaagaagggcggg
aagaaggggaaccagggacattactggaagcggcgaggacaccgcggtgaagaggaggac
acagaggacgatgtcaccaaggacctggacgactcgtctgctggtgctagcatggaggag
ggaagtgtttcgaagaatgctcattcaaagaaggattctgagagcacacctctaaaagga
gacaatggagcagacttggatgacatggaggatgactctgtggtgtctggtgggaaggag
gacgaggaccagaacaaagcagagatcagccgcctgatggactcgggcgaggacaacgtg
acagagcagacgcaccacatcatcatccccagctacagtgcctggttcgactacaactgc
atccacgagatcgagaggagagccctaccagagttcttcaatgggaagaacaagtccaaa
tctccagaaatatacctggcctaccgcaacttcatgatcgacacttaccgcctcaacccc
caagagtacctcacctccacctcctgccgcaggaacctgacaggggacgtatgcgccatt
atgagggtccacgccttcctggagcagtggggcttggtgaactaccaggtggactcagac
agcagacctctgcccatgggacccccaccgaccccccacttcaccgtgctggccgacacg
ccctctggcctcatgcccctcaatcacagacctcctccgattccaccttcacagcagatg
gccaatttccctgacaagatgaaagacaaagccatcgacctccagaattttggcctccgc
accgaccagtacaagaaaaactcaaagggtaaatcagtggtgtcctctcgagaatggacc
gagcaagagactctgcttctgctggaggctctagaaatgttcaaagacgactggaacaaa
gtgtcagagcacgtgggctcgcgcacacaagacgagtgcattctgcacttcctgcgcctg
cccatcgaggacccctacctggagagttcggagacgtcgctaggcccactggcttaccag
ccaatccccttcagccagtcgggaaaccccgtcatgagcacagtcgccttcctggcttcc
gtggtggaccccagggtggcgtccgccgctgccagggctgcgcttgaggagttctcacgc
gtgcgtgaggaggttcccgccgagctagtggaggctcacgtgaagaaggtgcaggaggcg
gccaggagcactggcaaggtggaccccgccttcggactagagagcagcggcattgccggc
actgcccctgaggaacccgagaagacgggtgagtcacaggccgcagaaggggacaagact
gagacggacacagattcccagcagggggacaaggctgagtccaaggacgaggcggagaag
ccaaatgagtccgccgagaaaagcggcaagatggaggctgctgagaaggtgaagaaggag
atcgtggaggttttggagcgagaggacgaaagcgaagaaggacacgaggccaaggccact
cctgctgataaagacgaagacgagtccatggagacatcctcctctgaacaggagaaggac
gagaaagccaccacggaggaaggagaggaaaagaggaaaaagatggagaatgacatcgga
gaaggaaacatcgccacagctgccgccgctgcgctggcgtctgctgccaccaaggccaag
cacctggcggccgtggaggagaggaagatcaaatcactggttgctctgctggtggagact
cagatgaagaagctggagattaagctgaggcactttgaggagctcgaaactatcatggac
cgtgagaaggaggctttggagcttcagcgtcagcagctgttgacagagcgtcaggcgttc
cacatggagcagctcaaatacgccgagatgaaggctcgccagcagatggagcagcaggcg
gcggcagctgccgccgccgccgccgcagctcagagccagggccacgtccccggagccgga
catcacccaggaccggcgggcatgcatcccggaggcccgcctccccaccacggaggacct
caacccggcgccgccatgcaccccagttacccccccatgggtcaccaccccatggcgccc
caccacccgggtcaaatagctcccatgggcccaggtcagccactgcctgggcgcatgttg
gccggaccgcccactgctggacccccacctggtggcatacctcccatgatgcccccacgc
cacccgggagcccccaacggcatgtacccaggaccagcgtcagcacagcctgaagccgtg
cccccgcttcctgttggccctccagcaccctctggcggccgtgcagcagacaactga
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