Phycodurus eques (leafy seadragon): 133403028
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Entry
133403028 CDS
T09682
Symbol
edc4
Name
(RefSeq) LOW QUALITY PROTEIN: enhancer of mRNA-decapping protein 4
KO
K12616
enhancer of mRNA-decapping protein 4
Organism
pee
Phycodurus eques (leafy seadragon)
Pathway
pee03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pee00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
133403028 (edc4)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pee03019
]
133403028 (edc4)
Messenger RNA biogenesis [BR:
pee03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
133403028 (edc4)
mRNA degradation factors
5'-3' decay
Decapping complex
133403028 (edc4)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Ge1_WD40
EDC4_C
WD40
WD40_WDHD1_1st
Beta-prop_EML_2
Beta-prop_EDC4L
WD40_CDC20-Fz
WD40_Prp19
Beta-prop_TEP1_2nd
Usp-48
WDR55
Pdc1_Ge1
Sey1_3HB
AAA
AI-2E_transport
Motif
Other DBs
NCBI-GeneID:
133403028
NCBI-ProteinID:
XP_061533465
LinkDB
All DBs
Position
5:complement(11366014..11446676)
Genome browser
AA seq
1439 aa
AA seq
DB search
MAFNASIDVEGATQHLRDILKLDRPGHSTGAESGDGQRRLSFNGELNGLLGAAGLLGAGD
LTAMSDSPRPISAVNSIAQDIQIIRLSGDDQSTCIPITSDNVEIVASQDSSINSKARGSN
MVKIQPVAKYDWEHKYHYGRLIAVSNSFTAYAIRGANNQAMIRVLSVDTAERSLLKGFTG
AVTDLAFAHLDSPLLGCVDEAGNLMVWELTCTSSTILDQIVVHIRRPSDTPLNLHRRLIW
CPFIPDDNEDNPDDTSQTLALLHEDRAEVWDLEVLRANNACWPVDATDLKEGLITVKGYT
QHVSEGALSPDGTVLATASHDGYIKFWQIYIEGGQDKPRCLHELRPHGGRPLSCLLFCDN
HKRQDPEVPFWRFLITGADQNQELKMWCTVSWTCLQTIRFSPDPMNLTVLPSLKASLDLS
AEYLILTDVQRKVLYVMELRQDLEKGKATFTAVSEFLLTHPVLSFGVQDVAQSPLRHTEV
LPAEEESESTTTEGAQGPTESKSGIQIKLYCVHTKSLQDVQIWFQPNAGSNSTGLPHSDP
PDSFGFSDHLTDQSSDKDSGSDPQIDLRNMSSLPAPADFLSNTTNGNGRMPKLMTPDAFM
TPSTSVPASPGSSASSLTIVTAISSNSTDSTNRTSDDISQSPNRADNSLSLPASTSSPRS
ASTVLPGLETIGAPASPSTPIVLDNPQVLGSPLIQPLASPTRARSPDVISSASTVMSQDI
PEIASQTLQLQRGHVSTLDSLPLSAFQTDSMASAASALHLLTSPRSANSNSLLHLELGCV
DGPAGGSLELEPRLNQTPSLLETASSQENPGLAGGSTEKSISHTSWPAAPDITRETRNRD
NSLGDWVSGLFLGDRVRSSAILEGLSRTAAPSHREKPDEVARASGSDASLIDGHPTLSLS
SRDESNDRLLGSPYACRTYHISQNDSQDPGAEQSDPEDEVAGSTSSSANCGTRPTHRLPV
KDWKTSPRCSPKLKRKTKKDGSESPQLRQLDSGQMNTDLQQELLMFLRGQQRELTELRGQ
IEAMQSSIMAQVERALTIHQEQEHCRLEQVLAETRNQQHHQEELSQQLSHTLCNSLTNRM
DKVIREEMKKTVPPTISKCLEPVTSQLSNTISSKMTSVEVTLKDNVSKVVKSKNTTDAIG
RAAAEAMQGPIQAAYKDAFQSIVLPVFERGCQSMFQQINDSFKQGTQEYIQQLEAHAKSR
KQREQETRDPMIDQLQQMMDGFQSSTDQLANSMTSNIRAEIQHQIQMMVGNLQESILSHV
QRIVKGEVSLAMKEQQAVVTSSIMQAMRSAAGTPVPTAHLDYQTQQANILQLLQQGQLNQ
AFQQALSATDLNLVLYVCETIDSQQVFGQQPCPLSQPVLLSLIQQLSSNLNTRSELKISY
LEDALMNLDHSDPRTRDHMASVLTQVRPKLFAFMQQDPHSPLTKRARRLMMMLQGLVNH
NT seq
4320 nt
NT seq
+upstream
nt +downstream
nt
atggctttcaacgctagtattgatgttgagggtgccacacagcatctccgggatattcta
aagctcgaccgtcctggtcacagcactggtgcagaatcaggtgatggccaaagacggttg
tcttttaatggtgagctgaacgggctattgggtgcagcaggtcttcttggagctggtgat
ttgacagccatgtcagactcgcccagaccaatttccgcagttaacagcattgctcaggat
atccagataatccgcctttcaggtgatgatcagtctacctgtatccccatcacctcggat
aatgtggagattgttgccagtcaggactcaagcatcaatagcaaagctcgaggtagcaac
atggtgaagattcagcctgttgccaaatatgactgggagcacaagtaccattatgggaga
cttattgctgtgtcaaattctttcacagcgtatgcaattcgaggagccaacaaccaggct
atgatacgcgtcttgagtgtggacacagcagagcgttcccttctgaaaggcttcaccggt
gctgtcacagatctggcttttgcccaccttgactcacctctgttgggttgtgtagatgaa
gctggcaaccttatggtttgggagctcacatgcaccagcagtacaatattagatcagata
gttgttcatatccgaaggccatcggacactccactgaacttgcatcggcgtctcatctgg
tgccctttcattccagatgataatgaggacaacccggatgacaccagccagaccttggcc
cttctgcatgaagacagggctgaagtgtgggaccttgaagtcttgagggccaacaatgct
tgttggcctgttgatgccacagatttgaaagaaggcctcatcacagtgaagggatatacc
cagcatgtcagcgaaggtgccctatctccagatggaacagtattagccacagccagtcat
gatggatacatcaagttctggcagatatatatagaaggggggcaggacaagccaagatgt
cttcatgaattgcgtcctcatggtggacgtcccctttcctgccttcttttctgtgacaac
cacaaaaggcaggaccctgaggttcctttctggaggtttcttatcactggagcagatcag
aaccaagaattaaagatgtggtgtactgtttcctggacctgtttgcagaccatcagattc
tctccagatccaatgaacttaacagttctgccaagtctcaaggcaagtttggacctgtcc
gctgagtatctcatccttactgacgtacagaggaaggttctctatgtgatggagctgaga
caagatctggaaaaagggaaagcaactttcactgcagtgtcagagtttctactgacccat
cctgtgcttagctttggagttcaagatgttgcccaaagccctttgcgacatactgaagtt
cttcctgcagaggaggagagtgagagcacaacaacagagggagctcaaggacccacagag
tccaaatctggcatccagattaaattgtactgtgttcacaccaagagtctgcaggatgtt
cagatctggttccagcctaatgcgggctcaaactctactggcctgccccattctgatcct
ccagatagttttgggttttcagaccatctgacagaccagagttctgacaaggactcagga
agtgacccccagatcgacctgagaaacatgtcatcgcttcctgcacctgctgacttcttg
tcaaacacaacgaatggcaacgggcgaatgccaaagttgatgactcctgatgccttcatg
acaccaagcacttcggtccctgcatctcctggcagtagtgccagtagtctgacaattgta
acagcaatcagcagcaactcaactgactctaccaatagaacttctgatgacattagtcag
agtcccaaccgggccgataatagtttgtcacttcctgcttccactagcagtcccagatct
gcttccactgtcctgcctggactggagacaataggggccccggcatcccccagcactcca
attgtgcttgacaaccctcaggttcttggttcgccactcattcaaccccttgcctctcca
actagggctcgctcccctgatgttatctcctcagcctcaacagtcatgtcacaggatatt
ccagagattgcatctcagaccctgcagcttcagcgtggtcatgtgtccaccttggactcc
ttacctctgtctgcttttcaaactgatagtatggcctctgctgcctctgcccttcacttg
ctcacttcaccacgctcagccaacagcaacagcctgttgcaccttgagcttggatgtgta
gatgggcctgctggagggtctctagagttagaacccagacttaaccaaacaccatctctc
ttggagactgcttcatcacaggaaaaccctgggttagcaggagggtctacagagaagagc
attagtcacacctcatggccagctgctcccgacatcaccagggaaaccaggaatagagac
aatagtcttggagactgggtgtctgggctctttcttggagatagggtgagaagctctgcc
atcctggagggtttgagtcggaccgctgcgccttcgcatagagagaagccagatgaggtg
gctcgggcttctggttcggatgcctctctgatagacggccaccccacattgagtctcagc
tcaagggatgagtcaaacgacagactcctgggttcaccctatgcatgtcgaacctatcac
atttcacagaatgacagtcaggaccctggtgctgagcagagtgaccctgaggatgaggtg
gctggttcaacatcatcatctgcaaattgtggcactcgccccactcacaggctaccagtt
aaagactggaagacctcacccagatgctcgccaaagcttaagagaaagaccaagaaagat
gggagtgaatcccctcagttgagacaattggactctggtcagatgaatacagatctgcag
caagagttgttgatgtttctcagaggccaacagagagagttaactgagctacgtggacaa
attgaagccatgcagagctccataatggcccaagtagagcgtgcactgaccattcatcag
gagcaagaacattgcagactagagcaggttctggcagagactcgaaatcagcagcaccat
caggaagaactcagccagcagctgagccacacactctgcaattccctgacaaacaggatg
gacaaagtaattcgagaggagatgaagaaaactgttccgccaactatttcgaagtgtctg
gagccagtgacatctcagctgagcaacactatatcttctaagatgacctctgtagaggtc
accctaaaggacaatgtcagcaaggttgtcaaatccaagaacacaacagacgcaattggc
cgagccgcagcagaggcaatgcaaggtcctatccaggctgcctataaagatgccttccag
agcattgtgctgcctgtttttgagagaggctgccagtccatgtttcagcaaattaatgac
agtttcaagcaaggaacacaagaatacatacagcagctcgaggcccatgccaaaagcagg
aaacagagagagcaggaaacccgagaccccatgattgaccaactgcaacaaatgatggac
ggcttccaaagctccactgatcagctggccaatagcatgacatctaacatccgggctgag
atccaacatcagattcagatgatggtgggaaatttgcaggagtcaattctaagtcatgta
cagcgcattgtcaaaggcgaggttagcctggcaatgaaggagcagcaggcagtggtgacc
tcaagcattatgcaggcaatgagatctgcagcaggtacccccgtccctacagcacatctc
gactaccagactcagcaagcaaacatcctgcagctccttcagcagggacagctcaaccaa
gctttccagcaggctctctcagctacagatctgaacttggtcttgtatgtgtgtgagacc
attgactcccagcaggtgtttggacaacaaccctgccctctcagccagcctgtgctcctg
tcactcatacaacaactgtcatccaacctcaatactcgctctgagctcaaaatcagctac
ttggaggacgcattgatgaatctggaccacagtgatcctcgaacgagagatcacatggcc
tccgtgctgacccaagtcagaccgaagctctttgccttcatgcagcaggacccccacagc
cctcttaccaagagagcacgacgcctcatgatgatgctacaagggctcgtcaaccactag
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integrated database retrieval system
