Phycodurus eques (leafy seadragon): 133403320
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Entry
133403320 CDS
T09682
Symbol
cnot1
Name
(RefSeq) CCR4-NOT transcription complex subunit 1 isoform X1
KO
K12604
CCR4-NOT transcription complex subunit 1
Organism
pee
Phycodurus eques (leafy seadragon)
Pathway
pee03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pee00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
133403320 (cnot1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pee03019
]
133403320 (cnot1)
Messenger RNA biogenesis [BR:
pee03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
133403320 (cnot1)
mRNA degradation factors
3'-5' decay
Ccr4-NOT complex
133403320 (cnot1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Not1
CNOT1_CAF1_bind
NOT1_connector
ARM_Cnot1
CNOT1_TTP_bind
DUF3819
CNOT1_HEAT
CNOT1_1st
Motif
Other DBs
NCBI-GeneID:
133403320
NCBI-ProteinID:
XP_061534163
LinkDB
All DBs
Position
5:complement(23368244..23424814)
Genome browser
AA seq
2395 aa
AA seq
DB search
MNLDSLSLALSQISYLVDNLTKKNYRASQQEIQHIVNRHGPEADRHLLRCLFSHVDFSGD
GKSSGKDFHQTQFLIQECVSLISKPNFISTLCYAIDSPLHYQKSLKPSVHLFTQLSKVLK
LSKVQEVIFGLALLNSCSADLRSFAAQFIKQKLPDLLRSYIDADLGGNQEGGFQDIAIEV
LHLLLSHLLFGQKGASGVGQEQIDAFLKTLCRDFPQERCPVVLAPLLYPEKRDILMDRIL
PDSGELAKTIMESSLAEFMQEVGYGFCASVDECRNIIHQYGVREVTASQVARVLGMMART
HSGLTDGIPLQSISAPGSGIWSDGKDKNDGSQAHTWNVEVLIDVVKEVNPNLNFKEVTYE
LDHAGFLIRDSKGLHIVVYGIQRGLGMEVFPVDLVYRPWKHAEGQLSFIQHSLMSPEVFC
FADYPCHTVAIDILKAPPEDDNREIATWKSLDLVESLLRLSEVGQYEQVKQLFSFPIKHC
PDMLVLALLQISTSWHTLRHELISTLMPTFLGNHPNSAIILHYAWHGQGQSPSIRQLIMH
SMAEWYMRGEQYDQAKLSRILDVAQDLKSLSMLLNGTPFAFVIDLAALASRREYLKLDKW
LTDKIREHGEPFIQACVTFLKRRCPSIMGGLALDKDQPKSSQLPPETLATMLACLQSCAG
SVSQELSETILTMVANCSNVMNKARQPPPGVMPKGRAPSTSSLDAISPVQMDPLTGMGSL
NLGGTATSHTQSMQGFPTSLSSAFSNPQSPAKAFPPLSNTNPSTPFGGIGSLSSQLPGMD
SGPLGSGIGTGIGSSLGMPAVSTDPFGTRKMSTPSLNPPTFQQSKMKASDLSQVWPEANQ
HFSKEIDDEANSYFQRIYNHPPHPTMSVDEVLEMLQRFKDSTIKREREVFNCMLRNLFEE
YRFFPQYPDKELHITACLFGGIIEKGLVTYMALGLALRYVLEALRKPYGSKMYYFGIAAL
DRFKNRLKDYPQYCQHLASIAHFLQFPHHLQECVQYIEYGQQSRDPPVKMQGSITTPGSL
ALAQVQAQAQSQQPGVPKAPQPGQTSTLVTTTTTTTTAAKTTTITRPTPSSFKKDVPPSI
NTTNIDTLLVATDQTERIVEPPENVQEKIAFIFNNLSQSNMTQKVEELKETVKEEFMPWV
SQYLVMKRVSIEPNFHSLYSNFLDTLKNPEFVKMVLTETYRNIKVLLTSDKAAANFSDRS
LLKNLGHWLGMITLAKNKPILYTDLEIKSLLLEAYVKGQQELLYVVPFVAKVLESSLRSI
VFRPQNPWTMAIMNVLAELHQEHDLKLNLKFEIEVLCKNLSLDINDLKPGNLLKDKDKLK
TLEEQLSAPKKEAKPPDEMLPVSTSGDFVPFSAPPSTPAATTTPCTTTGPPTPQFSYHDI
NVYALAGLAPHININANIPLLQAHPQLKQCVRQSVERAVQELVHPVVDRSIKIAMTTCEQ
IIRKDFALDSEESRMRVAAHHMMRNLTAGMAMITCREPLLVSIAANLKNSFAAALRAATP
QQRELMEEAAARVAQENCELACCFIQKTAVEKAGPEMDKRLATEFELRKHARQEGRRYCD
PVVLTYQAERMPEQIRLKVGGVDPKQLAVYEEFARNVPGFLPSNDLSQPTGFLAQPMKQQ
AWATDDVAQIYDKCMADLEQHLHAIPQALSMNPLTQALRSLLEAVALARNSRDGIAALGL
LQKAVEGLLDATSGADNDLLLRYRECHLLVLKALQDGRAYGPQWCNKQITRCLIECRDEY
KYNVEAVELLIRNHLVNMQQYDLHLAQSMENGLHYMAVAFAMQLVKLLLVDERSVSHVTE
ADLFHTIETLMRTCAHSRANAPEGLPQLMDVVRSNYEAMIDRAHGGPNFMMHSGISQASE
YDDPPGLREKAEYLLREWVNLYHSAAAGRDSTKAFSAFVGQMHQQGILKTDDLITRFFRL
CTEMCVEISYRAQAEQQHNPAASAAIIRAKCYHNLDAFVRLIALLVKHSGEASNTVTKIN
LLNKVLGIVVGVLIQDHDVRQTEFQQLPYHRIFIMLLLELNAPEHVLETINFQTLTAFCN
TFHILRPTKAPGFVYAWLELISHRIFIARMLAHTPQQKGWPMYAQLLIDLFKYLAPFLRN
VELNKPMQILYKGTLRVLLVLLHDFPEFLCDYHYGFCDVIPPNCIQLRNLILSAFPRNMR
LPDPFTPNLKVDMLSEINIAPRILTNFTAVMPSQFKKDLDSYLKTRSPVTFLSELRSNLQ
VSNEPGNRYNIQLINALVLYVGTQAIAHIHNKGSTPSMSTITHSAHMDIFQNLAVDLDTE
GRYLFLNAIANQLRYPNSHTHYFSCTMLYLFAEANTEAIQEQITRVLLERLIVNRPHPWG
LLITFIELIKNPAFKFWSHDFVHCAPEIEKLFQSVAQCCMGQKQAQQVMEGTGAS
NT seq
7188 nt
NT seq
+upstream
nt +downstream
nt
atgaatcttgactcgctctcgctggctttgtctcaaatcagctatctggtggacaatttg
acaaagaaaaactacagagccagccagcaagaaatacaacatattgtaaatcgtcacggt
cctgaggcagacaggcatctacttcgctgtcttttctcacatgtggatttcagtggcgat
ggtaaaagcagcggcaaggattttcaccagacacagtttctgatccaggagtgtgtgtcg
ctcatatcaaagcccaactttatttcgactttgtgctacgccattgacagtcccctgcac
taccaaaagagtttgaaaccatctgtccatttattcactcaactaagtaaagttcttaag
ctcagcaaggtccaagaggtgatatttgggctcgcgctactcaactcctgcagcgcagat
cttcggtcatttgctgcacagttcattaagcagaagcttcccgacctcctgcggtcatac
attgacgcagatctcggcggaaaccaagaaggtggtttccaagacatcgctatagaggtc
ttacacctactactatcccatttactgtttggccagaagggagccagtggtgtcggacag
gagcagattgacgcattcttgaagacactgtgccgagatttcccgcaggagcgctgccct
gtggtgctcgcaccactgttataccctgaaaaacgggacattctcatggacaggatcctg
cctgactcgggggagttagccaagaccataatggagagttctcttgcggagttcatgcag
gaagtaggctacggcttctgtgccagtgtggacgagtgcagaaacatcatccaccagtat
ggggtgagggaggtgacagccagccaggtagccagggtcctgggcatgatggctcgtaca
cactctggcctaactgatggtatccccctacagtccatctctgctcctggaagtggcatc
tggagtgatggaaaggataagaacgacggctcacaggcacacacgtggaatgttgaggtg
cttattgacgtagttaaagaagtgaatccaaacttgaacttcaaagaggtgacgtacgaa
ctggatcacgcaggattcctcatccgggacagtaagggcctccatatagtggtgtacggc
attcagcggggtttgggcatggaggtttttccagttgatctcgtatatcggccatggaaa
cacgcagaaggacagttatcattcattcaacactctctaatgagccccgaagtgttctgc
tttgccgactacccttgccacacagtggcaatcgacattcttaaagcgccaccggaggat
gacaacagggagattgcaacatggaaaagtctggatttggtggaaagcctccttaggcta
tcagaggttggccagtacgagcaggtgaagcaactcttcagcttccccatcaagcactgc
ccggatatgcttgttctggcattgctgcagatctcgacctcctggcacacactgcgccat
gagctcatctctaccctaatgcccacctttctgggaaaccacccgaactcagctatcatc
ctgcactatgcctggcatggacagggacagtctccttccatccgtcagttaattatgcat
tcaatggctgagtggtatatgagaggtgagcagtatgaccaagccaagttgtctcgtatc
ctggatgtggcccaagacttgaagtctctctcgatgctgctgaatggtactccatttgcc
tttgttattgaccttgctgcacttgcctctcgccgtgaatacctcaaacttgataaatgg
ttgactgacaaaattagagagcacggggaaccttttatccaagcttgcgtcacattcctg
aagaggcgatgcccatccattatggggggtctggccctagacaaggaccagcctaaaagc
tctcagttgcctccagagaccttagccaccatgctggcctgtcttcagtcttgcgctggg
agtgtttcgcaagagctttccgagactatcctgaccatggttgcaaactgcagcaatgtt
atgaacaaagcccggcagccaccacctggagtcatgcctaaaggtcgggctccgagcacc
agcagcctggatgccatttcccctgttcagatggaccctcttacaggcatgggctccttg
aacctgggtggcacggccacctcccacactcagagcatgcagggtttccccacctccctt
agttcagcgttcagtaatccccaatcgccagcaaaggcatttccaccactctcaaacacc
aatccaagcacaccatttgggggtattggcagcttgtcctcgcagctccctggtatggac
tctggtcccttgggctcgggcatcggcaccggtattggttctagtcttggaatgccagca
gtaagcactgatccatttggcaccaggaaaatgagcacaccaagcctgaacccacctacc
ttccagcagagtaagatgaaggcctctgacctttctcaggtttggcctgaggcaaaccag
cactttagcaaggagatagatgatgaagccaacagttacttccagcgcatctacaaccac
ccacctcacccgactatgtctgtggacgaagttctagaaatgcttcagcggttcaaagat
tccaccatcaaacgggagcgagaagtgttcaattgtatgcttcggaacttgtttgaggag
taccgcttcttcccccaatatccggacaaggagctccacatcacggcctgcctgtttggt
ggcatcattgagaaaggtcttgtcacctacatggccctcggcctggcactccgatacgtg
cttgaagccttaagaaaaccatacggatctaaaatgtattactttggaatcgctgcccta
gaccggttcaaaaacagattgaaggactacccccagtattgtcaacatcttgcatcaatt
gcacattttttgcaatttccccaccatttacaagagtgtgtgcagtatattgagtatggc
caacagtcacgggaccccccggtgaagatgcaaggctccatcaccaccccaggcagtctg
gcgctggcacaggttcaagcccaagcccaatcacagcaacccggtgtcccaaaagcaccg
caaccaggacaaacgagcaccctagtcacaaccactacgaccactaccacggctgctaaa
accactaccatcacaaggccaacacccagcagcttcaagaaggatgtgcctccctccata
aacactacaaatattgacactctactggtggctactgaccaaacagaaaggattgtagaa
cctccagagaatgttcaggagaagattgcgttcatcttcaataacctttctcagtcaaac
atgacacaaaaggtagaggagttgaaagagaccgtgaaggaagagttcatgccatgggtg
tctcagtatctggtgatgaagcgtgtcagcattgagcctaattttcacagtctttactcc
aactttctggacacactgaagaatcctgagtttgtcaaaatggtcctcacggagacgtac
agaaacatcaaggttttgttgacatctgacaaggctgctgccaatttctctgatcgctca
ttgctgaagaacctgggccactggctgggcatgattacactggccaaaaacaagcctatt
ctctatacagatctggaaattaagtctctgctactggaagcctatgtgaaaggccagcag
gagctcctttacgtagttccctttgtggccaaagttttggagtccagtctgcgaagcatt
gttttcaggccccagaacccttggaccatggccatcatgaatgttctcgctgagctacat
caagaacatgacctcaagcttaacttaaaatttgagattgaagttctttgtaagaacttg
tctctggacatcaatgacctgaagccagggaacctgttgaaggacaaggacaagcttaag
actcttgaggagcagctgtctgcaccaaagaaagaagcaaagcctccagatgagatgctc
ccagtttctacatcaggagactttgttccgttttcagcacccccctccacaccagctgcc
accaccaccccttgcacaaccacggggccccccaccccacaattcagttatcacgacatt
aacgtgtacgccttggcaggcctggcaccacacatcaatataaatgccaacatccctctt
ctacaagcccatcctcagttgaagcagtgtgtgaggcaatcagttgagcgcgccgtccag
gagctggtgcatcccgtggttgaccgctctatcaaaatcgctatgacgacatgtgagcaa
atcatccggaaggacttcgctctggattcagaggagtcccgcatgcgtgtggcggcacac
cacatgatgaggaacctgactgccggcatggccatgatcacctgtcgagagcccctactc
gtcagcatagccgctaatctcaagaacagttttgcggctgcgctaagggcggcaactccc
caacagagggaactgatggaggaggctgcagcgagggttgctcaggagaactgtgaactg
gcatgttgctttattcagaagacagctgtggagaaggctggccctgaaatggacaagagg
cttgccacggaatttgaactcaggaagcatgcacgccaagaaggacgccgttactgtgat
ccagttgttttgacttaccaggctgaacgtatgcctgagcagataagactaaaggtggga
ggagttgacccaaagcagctagctgtgtatgaggagtttgcaaggaatgttcccggtttc
ttacccagtaatgatctttctcaaccaacggggttcctggctcagccaatgaagcaacaa
gcgtgggccacggatgatgttgcacaaatctatgacaagtgcatggcagacttggagcag
catcttcacgccatccctcaggcgctttccatgaaccccctgacccaagccctgcgcagc
ctgctagaggctgtggccttggcaagaaactccagggatggtattgcagctcttggactg
ctgcagaaggctgtggaaggccttctggatgccacaagcggggctgataatgacttgctt
ctccgttatcgggagtgccacctactggttctaaaagccctccaggatgggcgcgcatac
ggaccacagtggtgcaacaaacaaatcaccaggtgtctgattgaatgccgggatgagtac
aagtacaatgtcgaggcggtggagcttttgatccgaaatcatcttgtgaatatgcagcag
tacgatctgcacctagcccagtcaatggaaaatggactccactacatggcggtggcattt
gccatgcagttagtgaagctcctgctggtggatgagcgcagtgtgagccatgtcactgaa
gcggatctcttccacaccattgagactttaatgaggacctgtgcgcactctcgagcaaat
gcgccagaaggtcttccccagctgatggatgttgttcgctccaactacgaggccatgatt
gaccgggcccacggtggtccaaacttcatgatgcactctgggatttcccaggcttcggag
tacgatgatccccccggcctgagggagaaggcggagtatcttctgagggaatgggtcaac
ctgtaccactcggctgctgctggccgggacagcaccaaagcattctctgcctttgttggc
cagatgcaccagcagggtattctgaagacggacgacctgatcacgcgcttcttccggctt
tgcaccgagatgtgtgtggagatcagttaccgcgcacaggctgaacaacagcacaaccca
gcagccagcgcagcaatcatcagagcaaagtgctaccacaatctggacgcctttgttcga
ctcatagctctgctcgtcaaacactctggagaggcctccaacaccgtgaccaagatcaac
ctcctcaacaaggtgctgggaatcgttgttggggttttgatccaggaccatgatgtccgt
cagacggaattccagcagctgccctaccaccgcattttcatcatgctactgttggagctc
aatgctcctgagcacgttctggagaccatcaacttccagacactcaccgccttctgcaac
acctttcacatactgagacccaccaaagcgcccggttttgtgtacgcttggcttgaactg
atctcccatcgcatcttcatcgcccgcatgcttgcgcacacgccacagcagaagggttgg
cccatgtatgcacagttgctcattgatctcttcaagtacctggcacctttcttgcggaat
gtagagctcaacaaacctatgcaaatcctctacaagggcacactgagagtactgctggtc
ctgttgcatgatttcccagagttcttgtgtgattaccattatgggttctgtgacgtgatc
ccacccaactgcattcagctacgtaacctcatcctgagtgcctttccacgcaacatgagg
ctccctgaccctttcacacccaatctcaaggtggacatgctgagtgagatcaacatcgct
cctcgcatcctcaccaacttcacagctgtcatgccttcccagttcaagaaggatttggac
tcctatctcaaaacgcgttctccggtcactttcctctcggagctgcgcagcaatctacaa
gtttcaaatgagccaggaaaccgctacaacatccagctaatcaacgccttagtgttgtat
gtgggcacgcaggccatcgcgcacatccacaacaagggcagcacgccctccatgagcacc
atcacccactctgcacacatggacatcttccagaacctggctgtggacctggacacagag
ggacgttacctgttcttgaacgccatcgccaatcagctgcgctacccaaacagccacacg
cattatttcagttgcaccatgctctatctgtttgctgaggcaaacacagaggccatccag
gagcagatcaccagggtcctgttggagaggctgatcgtgaaccggcctcacccatggggt
ctcctcatcaccttcatcgagctcatcaagaatccggccttcaagttctggagccatgac
ttcgtgcactgtgcccccgagattgaaaagttgttccagtcagtggctcagtgttgcatg
ggccagaagcaggcccagcaggtgatggaaggaaccggtgccagctag
DBGET
integrated database retrieval system
