Phycodurus eques (leafy seadragon): 133403515
Help
Entry
133403515 CDS
T09682
Symbol
patl1
Name
(RefSeq) protein PAT1 homolog 1 isoform X1
KO
K12617
DNA topoisomerase 2-associated protein PAT1
Organism
pee
Phycodurus eques (leafy seadragon)
Pathway
pee03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pee00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
133403515 (patl1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pee03019
]
133403515 (patl1)
Messenger RNA biogenesis [BR:
pee03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
133403515 (patl1)
mRNA degradation factors
5'-3' decay
Decapping complex
133403515 (patl1)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
PAT1
DUF3849
Motif
Other DBs
NCBI-GeneID:
133403515
NCBI-ProteinID:
XP_061534379
LinkDB
All DBs
Position
6:complement(3251205..3298962)
Genome browser
AA seq
825 aa
AA seq
DB search
MFRFQSLDEDCTLEEEDDGVVEEEEEIDQFNDDTFGAGAVDDDWQEEHKRLAELDERDEL
GEGLGLGVGVKDESDLGDAENSSCTYVTSGGGHTPFHAPLPLPHQSSLSGMQQTDVEDGR
REGDLAESLARLVLEADPAIAGVGAAERPIFSQNQRLGHDSRSRALHQPSPISHSPHPHQ
QPHQHQRPAAPSTSGHPPSSMLTYQQQQHLLRSVPGTIGQMNSRNIWENRMGFGPVSVTP
GLVTHMELPLQDSPLMSIIKEVGLPKRPSQGQNDGRDLSERVPPPRSSSPVIGSPPVRAV
PIGTPPKQPMGHSLNHQIHHPTAVHVRAPIQHRYPPPFPERLSPNTLLNFANSPLCRGPF
PPGISPVLSQIQRAQLLNSQVAGVHRGGPVPPLLPAGGGFRPFFSGPHSTHGHRMGLPHP
HGHPIHMPPIRHNATHLHPQHRRILTQRMQNRGGDRSRTGGDWRSRDPYSNLMTQKEKEW
VTKIQMMQLQSTDPFLDDYYYQHYYEKMEKRQEKERDSSKKEHTTKLITPQVAKIEHTYR
PVQFAGSLGKLTVSSVNNPRKMIDAVVTTRSDDEEKREKQVWNKRRQILYTVEKIYSLLL
EVQDFEKRFVHAPEEDREALLEQHKTNTMQLCNSLQEKEWDDRVSDEQCVMIMSVRKGKR
LISRLLPYLPPSQAAAVVMTIARNLPTLAKKDKQDQVLCWLVEPVSAVIVSMSSTALTDL
LQELQGSEGQLATVLHNKFGVTLLYLILSEGERMQSSNPNCQLMDDNRWTELVYSVTREL
LSIPASSLSSPLFTPTNLLTLFSRFIDHQRLDLLQEKLQISDSSR
NT seq
2478 nt
NT seq
+upstream
nt +downstream
nt
atgtttcgatttcagtccctggatgaagactgtacattggaggaggaagatgacggagta
gtcgaagaagaagaagaaattgatcagtttaacgatgacacctttggagctggagctgtt
gatgatgactggcaagaggaacataagcgccttgctgagcttgatgagcgagatgagctt
ggagaggggcttgggttgggagtgggggtgaaagatgaatcagatttaggagatgctgag
aattcatcgtgcacctatgtcacatctggcgggggccataccccctttcacgcacccctc
cctttaccccaccagtcctctttgtctggcatgcaacaaacagatgtggaagatggaaga
agggaaggtgacttggctgagtcgctggcaagacttgtcctggaagctgacccagctatt
gctggagttggggcagcagagaggcctattttttctcaaaaccaaaggttggggcacgac
tcgaggtccagagccctgcaccaaccttcccccatttcacattcacctcatccccaccag
cagccccatcagcaccaacggcctgctgcgccctccacctcaggccatcctccctcatca
atgctcacctatcaacagcagcaacatttacttcgctctgtacctggtaccattggccag
atgaactcacgcaatatctgggagaaccggatgggttttggaccagtcagtgttaccccg
ggactagttacacacatggagctgcctcttcaggatagtccgttaatgtcaataataaag
gaggtgggacttccaaaacgtccatctcaggggcagaatgatggccgtgatttgtcagaa
agggttccaccaccgcgctcttcttctcctgtgattggctcccctccagtaagggcagtg
cctattgggactccgccgaaacaaccaatgggtcactccttaaatcatcagattcatcat
cccacagcagttcatgtgcgcgcccccatccagcacagatacccacctcctttccctgaa
cgtctgtcacccaacactctgctcaatttcgctaactcgccactttgtcgtggaccattt
cctccaggaatcagtccagtgctgtcacagattcaacgggcccagcttctcaactctcag
gtagccggagtccaccgtggtggtcccgtgcctcctttgttaccagctggtggtggtttc
agaccatttttcagtggcccacactctacacacggtcatcggatgggtctgccgcatcct
catggccaccccatccacatgccacccatcaggcacaacgccactcacctccatcctcaa
caccggcgcatacttacccagcgaatgcaaaacaggggcggggaccgaagcagaactgga
ggggactggcgcagcagggacccgtatagtaacctgatgactcagaaagagaaagaatgg
gtcactaaaatccaaatgatgcaacttcaaagtactgaccctttcctggatgactactac
taccagcactactatgaaaagatggagaaacgtcaggagaaagaaagagacagcagtaaa
aaagaacacactaccaagctcatcactccacaagttgccaagattgaacacacctataga
ccagttcagtttgcaggatctttgggtaagttgacagtttcaagtgtcaacaatccacgt
aaaatgattgacgcagtagtgaccacacgctcagatgatgaggagaaaagagaaaagcag
gtttggaataagagacggcagattctgtacactgtggaaaagatctacagtttgcttctc
gaggttcaagactttgagaaacgttttgtccatgcaccagaggaggacagggaggcttta
ctggagcagcacaaaaccaatactatgcagctctgtaactctctacaagagaaggagtgg
gatgacagggtgagtgatgagcagtgtgtaatgatcatgtcggtgaggaaaggcaagcgg
ctcatctccaggctcctcccctacctacccccctcccaggctgctgccgttgttatgaca
atcgcccgcaaccttccaaccctggccaagaaggacaagcaggaccaggtgctgtgctgg
ttagtggagccagtctctgcagtcatcgtgtccatgtcgagcactgccctcacagacctg
ctccaggagcttcagggcagtgagggtcaacttgccacagtactgcacaataagtttggt
gtgacactgctctatctgatcttgagtgaaggagagaggatgcaaagctccaaccccaac
tgtcagcttatggatgacaatcgatggacagagctggtgtattctgtgaccagggagttg
ctcagcattcccgcttcatctctctcatctcctctcttcacacctacaaacctgctcacc
ctcttctcacgctttatagaccaccagcgcttggacttgttgcaggaaaagctacagatc
tctgactcgtccaggtag
DBGET
integrated database retrieval system
