Phycodurus eques (leafy seadragon): 133403847
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Entry
133403847 CDS
T09682
Symbol
pdcd11
Name
(RefSeq) protein RRP5 homolog isoform X1
KO
K14792
rRNA biogenesis protein RRP5
Organism
pee
Phycodurus eques (leafy seadragon)
Brite
KEGG Orthology (KO) [BR:
pee00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
pee03009
]
133403847 (pdcd11)
Ribosome biogenesis [BR:
pee03009
]
Eukaryotic type
90S particles
Other 90S particles
133403847 (pdcd11)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
S1_RRP5
S1
OB_RRP5_4th
Spt6_S1
HAT_PRP39_C
HAT_PRP39_N
HAT_Syf1_CNRKL1_N
TPR_14
Suf
TPR_19
HAT_Syf1_CNRKL1_C
TPR_16
ARM_TT21
ARM_TT21_5th
TPR_15
PPR
TPR_CcmH_CycH
ARM_TT21_N
ANAPC3
DUF5680
Motif
Other DBs
NCBI-GeneID:
133403847
NCBI-ProteinID:
XP_061535174
LinkDB
All DBs
Position
6:complement(13030285..13055746)
Genome browser
AA seq
1838 aa
AA seq
DB search
MASAEEDFPRGGTFRKACESKIATRIEVDNLFQSNEKEDSKKRKGGSKDDRKKVKKQKTA
EKNGGGLTLNAAAKCVEILHIKNLKEGMLMLGCVKDVSDFEVTVGLPCGLQGFLSIRNIC
DPYTKLLTEQLDSTDVEDICALPHLFYSGMMLRCVVAELDTAKGGSISIQLSINPKLVNK
ALTSNALKAGMVLSGCVESLEDHGCIVDVGVKGTKAFLSKKADKDQQNSNNDITVISGLF
LRFLFKVSKVTIVFSLCVCPELKVGQYVTCQIKEVKHNGRLLRLSINPSAAAQACAESQQ
GWTLTNLLPGLLVKATVKKVTKHGLLMDFLSSFSGQVDFLHMEREMASSYTEGSKVLARV
LYVEPSTRLVGLSLRGYIVQPKTRINTVPACGDRVGEVVEDCRMTSMHHMSGAMLELPDK
TPAFVHRNNLKEPKAPFNENKVRAIPKHTCRIIDYSPMDQIHFASLRKTVIEKPFFRYQD
LHAGQFVEGTVSLLLNHGMVVHLTSHIRGLVPRTHLSDIVLKNPEKKYTKGMKVKCRVLS
VDVDNKKLYLTRKKALLESSLPLFFSYHDARRGRVSHGYIVCVKNFGCIVRFYNNVKGLV
PVNELSSEVIPNPEEVFYVGQVLRTRVLQCDPEKEKMLLSFKAVVEGDTEEKAKPQFVCE
VGKRLEAKVLKKSVNGLEVSILPDEVRALLHTMHLSDLTSNCPLLWEALQEGDTISNLTC
VLQNRKNITVTKKPMVIWSLEEGMAAKDFSEIKVGMEMIGWVKSIMAYGIFVEFPFGLVG
LAPKSAISDKFIPDTTTTFQLGQTVIAKVTNLDEEKKRFLVTLKTSEVTVPEESAQTALI
HAVQERRAVTEMIAMKDTRDLYQQLAALSVGQRLKLVVDTVKNGDCTNFKSDELVGATIQ
ATKYHVIGFQLTPGQKVIAVILYVDILSTTVHVSLLSKLVTKKKMLTEESKYSAILQHID
KDLAIISVEDTAQLTVIQTRNHLNEVILSELKAGMYLAIEVVESSCEQLQGLPLVSWKRT
LPKRLRTHSENQTDSDTGYRFGEIVKGKVQTVKPTIIQVILEDGSTGYVHVSEVMEATEV
SPGSFPTSSVKVGSVVTCRVIGGREATTNKVLPISRPGYTYTFPDLTLIPSKLDVKLELK
SVTAVQKLNTYKVGEEITCFVSKYHPERKSLEVTTTFSLSGTVELLAMITDLKDSSRPEK
LYKLGQAVKAKVVEVSLKPQRLLLSLTGVHELEADGITLGVVTSMLPHLGLVVKLPFGCV
GTVAITDLADAYKPNPLAAFSKDQLLRCYLIGSENGKWQLSLRPSRLNPQQAKPAKDTEV
LSLNNLQEGQLIRGYVKSVSEQGVFIRLSNGITGRAQLQQSTKYFVNNHSVLCNHLPPST
LLTTKIIRIDRKENLVDLSLLTVETGKPDILPESLHLPLRLLGEEKKKYNLEKKKKRSLS
DSEEKQKESEAPKKKKKKTNLQDSDSGLDVFFREEEDQEDKCTKSVAVNVSSSSPFRLQI
AAGFSWDLGLRSLKPASANNHADSSDGEDQDESNKSQKKSRHELEQEKKMAEKALMQREM
ELMDPQLRPQDAAAFERLLLASPNSSLLWLQYMAHHLQATQIEQARAVAERALKTISFRE
EQEKLNVWVARLNLENMYGTQERLKKVFEQALQFCEPMPVYQQLADIYSKSDKIKEAENL
YKSMVKRFRQNKAVWLSYGTFLLQQGQSDAASALLQRALKSVPSKESVDVIAKFSQLEFR
YGNTEKGRTMFDKILTSYPKRTDLWSVFIDLMIKHGSQKEVRAIFDRVIHLSVSVKKIKF
FFKRYLEYEKKHGTPQSIRAVKEKAVEFVEGKGTDAAC
NT seq
5517 nt
NT seq
+upstream
nt +downstream
nt
atggcatcagcagaggaagacttccctcgaggagggacatttaggaaggcttgtgaaagt
aaaatagctacacggattgaggtggacaaccttttccagtcaaatgaaaaagaagattct
aagaaaaggaaagggggttccaaagatgaccgcaagaaagtcaagaagcaaaagactgct
gagaagaatggaggtggtctgactctcaatgcagctgcaaaatgtgtggaaatactacat
attaagaatttaaaggaaggcatgttgatgctgggctgtgtaaaagatgtgtcagacttt
gaggtgactgttggtctcccttgtggtctgcaaggctttctcagcatcaggaacatctgt
gacccatacaccaagctgctcactgaacaactggattcaactgacgttgaggacatttgt
gctttgccacacctcttctattctggcatgatgttgagatgtgtggttgcagagcttgac
actgccaaaggaggctctatcagcatccagctgtcaatcaatccgaagctggtcaacaag
gctctcacatcaaatgctcttaaagctggcatggttttgagtgggtgtgttgagagcctt
gaagatcatggctgcatagttgacgttggtgtcaagggaaccaaagccttcctgtccaag
aaagctgacaaagaccaacagaacagtaacaatgatatcacagtcatcagtggtttattc
ttgcgctttctttttaaagtcagcaaagtgacaatagtattttctttgtgtgtgtgtcca
gagctgaaagtgggccagtacgtgacttgtcaaataaaagaagtgaagcacaatggacgt
ttattgcgtctctccatcaacccctcagctgctgcccaagcatgtgctgaatcccaacaa
ggatggaccttgactaatcttctgccgggacttcttgttaaagcgacagtcaaaaaggtg
accaaacacggactgctcatggactttctgtcctccttcagtggtcaggtggacttcctt
cacatggagcgagagatggcttccagttacactgagggaagcaaggtcctggcccgtgtg
ctatacgtggaaccgtccacccgcttggtgggactgagcctgcgtggctacatagttcaa
cctaagaccagaatcaataccgttcctgcctgcggcgaccgtgtcggtgaggtggtggag
gactgcaggatgacctctatgcaccacatgtctggagctatgttggaactgcctgacaaa
accccggcatttgtgcatagaaacaacctgaaggagcctaaagcgccatttaatgaaaac
aaagtacgagccatccccaagcacacttgcaggataattgactacagccccatggaccaa
attcattttgcttctttgcgcaagactgtgattgagaaacccttctttcgataccaagat
cttcatgctggtcagtttgtagaggggacagtgtctctcctgttgaatcatggcatggtg
gtgcatttaactagccacattcgagggttggtgcctcggactcatctatctgacatcgtc
ttaaagaacccggagaagaagtatacaaagggcatgaaagtcaaatgtcgggtcctgtca
gtggatgtagacaacaaaaagctgtatttgacccgaaagaaggccctcctagaaagctcc
ctgcccttattctttagctaccatgatgcccgtcgtggacgagtgtcacacggttacatt
gtctgtgtcaaaaactttggctgcatcgttcgattctacaacaatgttaagggcctggtg
ccagtcaacgaactcagctctgaagtcatccccaaccctgaggaagtcttctatgttggt
caggtgctgaggacaagggttctacaatgtgatccagagaaggaaaagatgctgctgtca
tttaaggctgtggtggagggagacactgaagaaaaagcaaagccccagtttgtctgtgag
gtgggaaagagactggaggccaaggtgcttaagaagtcagtcaatggtctggaagtgtcc
attcttcctgatgaggttcgtgccctcctacacaccatgcacctctcggatctcacgtcc
aactgccctctgctgtgggaggccctgcaggagggagacaccatttcaaacctcacctgc
gttctccagaataggaaaaacattactgtcaccaagaagccaatggtgatctggtcactg
gaggaaggaatggctgctaaagatttctcagagatcaaagttggaatggagatgattggc
tgggtcaagagcatcatggcctacggcatctttgtcgagtttccattcggccttgttggt
cttgcaccgaagtctgccatatctgataagttcattcctgatacaacaaccaccttccag
ttgggccagacagtgattgctaaggtgactaatttggatgaggagaagaagcgattcctg
gtcacactgaaaacgtctgaggtcactgtgccagaggaatctgctcagacggcacttatt
catgctgtgcaagagagacgagctgtgactgaaatgattgcaatgaaagacaccagagat
ctttaccagcagctagctgctctgtctgttggccagaggctgaagttggttgtggacact
gtgaagaatggcgattgtaccaacttcaagtctgatgaattggtcggtgccaccatacag
gccactaaataccacgtgattgggtttcagttgaccccaggacaaaaggttattgcagtt
atcctttatgttgacatcctgtctactactgtccatgtgtccctcctttccaaattggtt
acaaaaaagaaaatgctgacagaagagagcaagtactctgcaattttgcagcacatcgat
aaagacctagccatcatctcagtggaggacactgctcagctgacggtcatccaaacacga
aaccacctcaatgaggtcatcctatcagagctgaaggcagggatgtatttggcaattgag
gttgttgaatccagctgtgagcaactgcaagggctccctctagtgtcatggaagcgtact
ctacccaaacgactgcgcactcattcagaaaaccagactgattctgacactggttaccgg
tttggagaaattgtgaagggtaaagtacagacagtgaagcctaccatcattcaggtcata
cttgaggatggaagcacaggctatgtgcatgtgtctgaggtaatggaggctacagaagtg
tcaccaggatccttccccacgtcttcagttaaagtgggcagtgtggtcacctgcagggtc
attggaggacgtgaagccaccactaacaaagtcttacccatttcccgcccaggatacaca
tacaccttcccagatctcacactaatacccagcaaactggatgtgaaattagagctcaag
tcggttacagctgtacagaaactgaacacttacaaggttggagaggaaattacctgtttt
gtttcaaagtatcatcctgagaggaagagtttggaggtcaccacgactttttctctctca
gggacagtggaactgctagccatgattactgatctgaaagattccagccgcccagagaag
ttgtacaaacttggccaggctgtcaaagctaaagtggttgaagtgagtctcaagcctcag
cgactgttactgtcactcacaggtgttcatgaattggaggcagacggtatcactttggga
gtggtgactagcatgctgccgcacctcggccttgtggtcaagcttccatttggttgcgtg
ggaactgtggccatcactgaccttgccgatgcatacaagcccaacccgttggcagcattc
agcaaggatcagctgcttaggtgttatcttataggcagtgaaaatggcaagtggcagtta
tctctacgaccatcaaggttgaacccacagcaggccaagccagcaaaagacacagaggtt
ttgtccttaaacaatctgcaagaaggccagttaatcagaggctatgtcaagtctgtcagt
gagcaaggggtctttataaggttgtcaaacggcatcactggaagagcccagcttcagcag
tccaccaagtactttgttaacaaccacagtgtcctctgtaatcatctgccccccagcact
ctgctcaccacaaaaatcatcagaatcgacagaaaagagaatttagttgacctctccctg
ctcaccgtggagactgggaagccagacatccttccagaatccctccatctgccgctacgt
ctcttgggagaggagaaaaagaagtacaaccttgaaaagaagaaaaaacgctcactgtct
gacagtgaagagaaacaaaaagagtcggaggccccaaagaagaaaaagaagaaaacaaac
cttcaagacagtgacagtgggcttgatgtgttcttcagagaggaagaagatcaggaagac
aaatgcaccaaatctgtcgctgtaaacgtttctagttcgagtcctttcagactgcagatt
gcggcgggtttctcctgggatcttggcttgaggtcattgaagcctgcttcagcaaacaat
catgcagactcgagtgatggagaggaccaagatgaaagcaacaagtctcagaagaagtct
cggcatgagcttgagcaggaaaaaaagatggcggagaaagccttgatgcagcgggagatg
gagttgatggaccctcagctcaggccgcaggatgcagcagcgtttgagcgcctgctcttg
gcctctcccaatagctcgctgctctggcttcagtacatggctcaccacttgcaggccacc
cagattgagcaggcccgtgctgtggcagaaagggctcttaaaaccatttctttcagagag
gagcaggaaaagctgaatgtgtgggtggcccgactaaacttggagaatatgtacgggacc
caggagcgcctcaagaaagtgtttgagcaagccctccagttttgtgagcccatgcccgtc
tatcagcagctggctgacatctactccaaatctgacaagatcaaggaggcagagaacctg
tataagtcaatggtgaagcgtttccgtcaaaacaaagcggtctggctgagctatggtacc
ttcctccttcagcagggccagagtgacgctgccagcgctctcctgcaaagggcgcttaaa
agtgtaccatccaaagaaagtgtggatgtgatcgcaaagttttcccaactggagtttcgc
tatggaaacacagaaaagggtcgcacaatgtttgacaaaatcctgacaagctacccaaaa
cgcacagacctctggtccgttttcatcgacctcatgatcaaacatggatcacagaaggaa
gtccgggccatctttgatcgtgtgatccacctgagtgtgtcagtgaagaaaatcaagttc
ttcttcaagcgctaccttgagtacgagaagaagcacggtacaccacagagcatccgggct
gtaaaagaaaaggccgtggagtttgtggaaggcaaaggcactgatgccgcctgctag
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