Phycodurus eques (leafy seadragon): 133405982
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Entry
133405982 CDS
T09682
Name
(RefSeq) regulator of nonsense transcripts 1-like isoform X1
KO
K14326
regulator of nonsense transcripts 1 [EC:
5.6.2.5
5.6.2.3
]
Organism
pee
Phycodurus eques (leafy seadragon)
Pathway
pee03013
Nucleocytoplasmic transport
pee03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
pee00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
133405982
03015 mRNA surveillance pathway
133405982
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pee03019
]
133405982
Enzymes [BR:
pee01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.3 DNA 5'-3' helicase
133405982
5.6.2.5 RNA 5'-3' helicase
133405982
Messenger RNA biogenesis [BR:
pee03019
]
Eukaryotic type
mRNA surveillance and transport factors
Surveillance factors
Surveillance complex
133405982
mRNA cycle factors
Common to processing body (P body) and stress granule
133405982
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
UPF1_Zn_bind
AAA_12
AAA_11
UPF1_1B_dom
AAA_30
AAA_19
ResIII
SLFN-g3_helicase
NPHP3_N
DEAD
nSTAND3
NAT10_TcmA_helicase
ATPase
UvrD-helicase
AAA_16
SRP54
UvrD_C_2
AAA_22
AAA_5
Motif
Other DBs
NCBI-GeneID:
133405982
NCBI-ProteinID:
XP_061539094
LinkDB
All DBs
Position
8:complement(15351221..15373533)
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AA seq
1101 aa
AA seq
DB search
MSVEAYGPSSQTLTFLDTEETELLGADTQGSEYDFTDFTLPSQTQTQGQTQSQLESQVNG
PDEGLHNGGVEDSVAKASQLLAELNFEEDEEDAYYTKDLPVHACSYCGIHDPACVVYCNT
SKKWFCNGRGNTSGSHIVNHLVRAKCKEVTLHKDGPLGETVLECYNCGCRNVFLLGFIPA
KADSVVVLLCRQPCASQSSLKDINWDSSQWQPLIQDRCFLSWLVKIPSEQEQLRARQITA
QQINKLEELWKDNPTATLEDLEKPGVDEEPQHVLLRYEDAYQYQNIFGPLVKLEADYDKK
LKESQTQDNITVRWDLGLNKKRIAYFTLPKTDSGDMRLMQGDEICLRYKGDLAPLWKGIG
HVIKVPDNYGDEIAIELRSSVGAPVEIPHNFQVDFVWKATSFDRMQSALKTFAVDETSVS
GYIYHKLLGHEVEDVTIKCQLPKRFTAQGLPDLNHSQVYAVKTVLQRPLSLIQGPPGTGK
TVTSATIVYHLSRQGNGPVLVCAPSNIAVDQLTEKIDKTGLKVVRLCAKSREAIESPVSF
LALHNQISNMDSMPELQKLQQLKDETGELSSADEKRYRALKRTAERELLMNADVICCTCV
GAGDPRLAKMQFRSILIDESTQATEPECMVPVVLGAKQLILVGDHCQLGPVVMCKKAAKA
GLSQSLFERLVVLGIRPIRLQVQYRMHPALSAFPSNIFYEGSLQNGVTAADRIKKGFDFQ
WPQPDKPMFFYVTQGQEEIASSGTSYLNRTEAANVEKITTRLLKAGAKPDQIGIITPYEG
QRSYLVQYMQFSGSLHTKLYQQVEIASVDAFQGREKDFIILSCVRANEHQGIGFLNDPRR
LNVALTRAKYGVIIVGNPKALSKQPLWNNLLNNYKEQKVLVEGPLNNLRESLMQFSKPRK
LVNTINPGGRFMSTAMYDAREALIPGSAYDRSNTVGRPSNMYFQTHDQIGMIGAGPGHMA
AMNLPIPFNLVMPPMPPPSYLGQTNGPAAGRGAMKGNKPGRGGRQRPRGSATQGAGHGLN
SQASQDGASQSFSQGPLTQGYISMSQPSQMSQPGLSQPELSQDSYLGDEFKSQIDVALSQ
DSTYQGERAYQHGGVTGLSQY
NT seq
3306 nt
NT seq
+upstream
nt +downstream
nt
atgagtgtggaggcatacgggccaagctcccagaccctcacctttttggacacggaggaa
acggagttactcggagcggacacgcagggctccgaatacgacttcaccgacttcaccctc
ccgagccagactcagacccagggccagacccagagccagctggaaagccaggtgaacggt
cccgatgaggggctccataacggcggagtggaagattctgtggctaaagccagtcagtta
ttggcagaactcaattttgaggaggatgaagaagacgcctactacacgaaggacctgccc
gtgcacgcttgcagctattgtggtattcacgatccagcctgtgtggtttactgcaacacc
agcaagaagtggttctgcaatggacgtggaaatacatctggcagccacatagtaaatcat
ttggtgcgagccaaatgcaaagaggtgacacttcacaaagatggacctttgggagagact
gtgctggagtgttacaactgtgggtgtcgcaacgtcttcctcctgggtttcatccctgcc
aaggctgattctgtagtggtgctgctctgtagacagccttgtgccagccagagtagcctg
aaagacatcaactgggatagctcccagtggcagccgctgatccaagaccgctgttttctc
tcatggctggtgaagatcccgtcggagcaggagcagctgcgtgcccggcagattactgcc
cagcaaatcaacaagctggaggaactctggaaggacaaccccactgccaccttggaggac
ttggagaagcctggtgttgatgaagagccccaacatgtgttgctgcgctatgaggatgcc
taccagtaccaaaacatttttggtcctttagtcaaactggaggctgactacgacaagaag
ctcaaggagtctcagacccaagataatataacagtaaggtgggacttgggactgaataag
aagcggattgcatatttcactctgccgaagaccgattcaggtgatatgcgcttgatgcaa
ggtgatgagatctgcctgcgctacaaaggagacctggctccgctgtggaaagggatcggc
catgtcatcaaagttccagacaactatggggatgaaattgctattgagctgaggagtagt
gttggagcccctgtggaaattcctcataacttccaggtggactttgtgtggaaggctact
tcctttgacaggatgcagagtgctctgaagacctttgctgtggatgaaacctctgtgtca
ggctatatttaccacaagctgctgggtcacgaggtggaagatgttaccatcaagtgtcag
ctccccaagcgcttcactgcccagggcctacctgatctcaatcactcacaggtgtatgct
gtgaagacggtgctacagaggcctctcagtcttatccagggtcctcccggtactggcaag
acggttacctctgccactattgtctatcacctttcacgtcagggcaacggaccagtcctg
gtgtgcgctcccagtaacattgcagtggaccagttaaccgagaagattgacaagactggg
cttaaggtggtcaggctgtgtgctaaaagccgtgaggctattgagtcaccagtgtctttt
ctggcgttgcataaccagatcagcaatatggacagcatgccagaacttcagaaacttcag
cagctaaaggatgagaccggtgagctgtcttctgccgatgagaagcgctacagagccctg
aaacgcaccgctgagagggaactgctcatgaacgcggatgtgatctgctgcacctgtgtt
ggcgcaggagaccctcgcctggccaagatgcagtttcgctccatcctgattgacgaaagc
acccaggccaccgagcctgagtgtatggtgcctgttgttcttggagcaaagcagctcatc
ctggtgggtgaccactgccagcttggtcctgtggtaatgtgtaagaaggcagccaaggca
ggcttgtctcagtcgctgtttgagcgcttggtggttctgggtatccggccaattcgcctt
caggtccagtaccgaatgcatccagctctcagcgccttcccatctaacatcttctatgag
ggctccttgcaaaatggtgtcacagcagctgaccgcatcaagaaaggctttgacttccag
tggccacagccagacaaacccatgttcttttatgtgactcaaggccaggaggaaattgct
agctctggaacctcctacctgaataggaccgaggctgcaaatgtagagaaaatcaccact
aggctgttaaaggcaggtgccaagcctgaccagattgggatcatcaccccatatgagggt
cagcgttcctacctggtccaatatatgcagttcagtggctctcttcacactaagctctat
cagcaagtggaaatcgcaagtgtggatgccttccagggcagagagaaagacttcatcatc
ctgtcgtgtgttcgtgccaacgagcaccagggtatcggcttcttgaatgatccacgtcga
cttaatgtggctttgaccagagccaaatatggagtgatcattgtagggaaccccaaggcc
ctttctaagcagcctttgtggaacaacctgctgaacaactacaaggagcagaaggtcctc
gtggagggacccctcaacaacctgagggagagcctaatgcagttcagcaagccacgcaag
ctagtcaacaccatcaatcctggtggacgtttcatgagcactgcgatgtatgatgcacgt
gaagctctcattcctggttcagcctacgaccgcagcaatactgttggtcgcccgtcaaac
atgtatttccaaactcacgaccaaatcgggatgattggggcgggccctggtcacatggct
gcgatgaatctcccaatacccttcaacctggtgatgccccccatgcctccgcccagctac
ttaggccagactaacggccccgctgcaggccgtggagctatgaaggggaataagccagga
cgtggcgggcgccagaggccccgtggctcagcaactcaaggtgccggtcacggcctaaac
agccaagccagccaggatggggcgtcccagtcattctcacaggggccactgactcaaggc
tacatctcaatgagtcagccttcccagatgagccagcctggtctctcccagccagaactg
tcccaggacagttacctgggtgacgagttcaagtcccaaatcgacgtggctttgtctcag
gactcgacttaccagggtgaacgtgcataccagcatggtggggtgaccggcctgtcacag
tactag
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