Phycodurus eques (leafy seadragon): 133407385
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Entry
133407385 CDS
T09682
Name
(RefSeq) collagen alpha-1(XX) chain isoform X1
KO
K24357
collagen type XX alpha
Organism
pee
Phycodurus eques (leafy seadragon)
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
fn3
VWA
Collagen
Pur_ac_phosph_N
Ig_DSCAM-DSCAML_C
VWA_2
FN3_Tor_3rd
DUF4959
Motif
Other DBs
NCBI-GeneID:
133407385
NCBI-ProteinID:
XP_061541193
LinkDB
All DBs
Position
1:25999342..26050676
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AA seq
1581 aa
AA seq
DB search
MSLHQPDSSSTSSLSFHWIMLHFLFIVLLVSSEVHGQGRLKLTVLSEDRLQMKWKETDGP
IQSYKVRIRPISDVPQPELMLTTTRGRATVAGLDSSQEYALQVLMLNGTMEKLLAKRRFT
LDGLREEELIRSGQRRKLLPGGSGSGDLDDGTEALLALPTILYPDPVTTTVAMNAEPPTI
EPSPPPLDEPQGKSTKEKKKRKKEKERDRFKVEIKDEQGTTVGREEKPHKPPLPTQPVTG
AFPRKPFECNTDAAADIVFLVDGSWSIGRTNFRRVRDFLEGLMTPFRIGPNHIQIGLSQY
SGDPRTEWQLNNFTTKDQLVEAVRNFRYKGGNTFTGQALLHVMEENMRAKAGARSDTPFF
LVLLTDGKSQDDAIAAANRLKNVGVEIITVGVKNADEAELRQVASEPVDVNVFNVNDFPL
LSKLVARLVHILCGRIEDRGIIKQSEPEPTVDPTLSYPSPTDLRFSNLGSREVMLHWTNP
AKLVQQYRVVYHSAEGSSPQEVVLDGSESSVLLQSLSSQTLYHVSIFPVYEHSVGLALRG
TVTTVPLSMPTNLEVTPSSYSTLRVSWATAPGATEYLILYSALNDGEPDDAKEEKFGAEL
TMLELSSLLPATDYSVTLYALYDEDSSDPVTAIATTFPLPPPVSVHFPVVTHSMLRVSWV
PGAEDVPGHRITYSTNHGSEVKQVEVTGQSSVLVQSLSSLSRYLVSVRSHYPQGLSAALT
SNITTLKVPSPSDLRVTNFSGSEITVRWEAAADDVISYLIKWISLGGGDLRQLKVSGESE
GVVLEGMEDDKEYQISLSALYGDGAQSEAVAIRYSTLSGGGPSSVSVSEETPVSMMVSWV
PPNAHVLQYRVSYSALTRTENQDSAVLVPGGEKHMVLDSLQPDTRYSILVTAEYRNKEGG
SGSTQGKTTSLRVSSVSVVRSDHSSICVSWRPLSVVDGYRIVIQSVKDKVSMEENVDESS
STQCFSGLQAETLYRISVHSILGSAEGAAVSILHPTAQAPAKIPVNPRLYPIHNEVCPEV
TIRNRIVKGFDMMEAFGLTPKAHSSVDGVAAEPFVFNTLPAYTLYRDIQLTQSTKFIHPV
GFSPEHTISITFRLLQETPKEPFALWQLTDNDFQPKMGVVLDPSTKQLVYLSLDYRGEVQ
ELTFDQPQVHRLFYGSFHKVHLSVSQVGVSLSVDCQRVGDRPARPLGTLPTDGFEMLGKL
ARTRGPKSGSAAFQLQSFEIVCNTTWAAEDACCDLPALRDEESCPPLAYSCTCSSDVPGA
AGSPGPVGKPGPRGEKGDKGQQGHKGEMGPPGKPGLEGGLGAVGSRGPQGMTVQGKVGPP
GERGEKGEPGRAGLQGLPGPPGPKGEDGPLGPKGIRGVEGNMGPTGPAGSRGFQGMPGHP
GHTGERGFTGASGATGLPGSKGEQGGKGEPQSMAMIYQLVTEACEQLVHKEVRKLDMFID
DMSRKSAPVEEPVGPPGDPGIPGSRGPPGSRGTQGNIGPRGRPGRLGYPGEQGRSGLPGP
KGDAGANVQGAPGVRGHAGPLGESKIGMPGPKGENGQPGRPGLPGTPGQPGEIGPPGVCD
SSGGCHPVPQQTGGPYYVYQP
NT seq
4746 nt
NT seq
+upstream
nt +downstream
nt
atgtcccttcaccaaccagactcttcctcaacatcctcattgtcatttcattggatcatg
ttgcatttcctgtttatcgtcctgctggtgtcatcagaagttcatggccaaggtcgtctt
aagctgacggtcctgtctgaagacagactgcagatgaaatggaaagagacggatggtccc
attcagagctacaaggtccgaataagacctatctcagatgtgccacagccagagctcatg
ttgaccaccacacggggccgggcaaccgttgcaggactggactctagtcaggagtatgcc
ctccaagttctcatgcttaatgggaccatggagaaacttctggcaaagcgacgattcacc
ttggacggtctacgggaggaggagttgatccgtagcggtcaaaggaggaagctgttgcca
ggagggtctggatcaggagacctggatgatggtacggaggctctgctggctctgcctacc
attctgtatccagaccctgtaaccacaactgtggctatgaatgcagagccaccaactata
gaaccctctcctccgcctctggacgagccccagggcaaatccaccaaagagaagaaaaag
aggaagaaagaaaaagagcgagaccgctttaaggtggaaatcaaggatgaacaggggacg
acagtgggcagagaggagaaaccacacaagccaccccttcccacccaaccggttacaggt
gcatttccgagaaaacctttcgagtgcaacactgacgctgcggcggacattgtgtttttg
gtggatggctcctggagcattggacgcactaacttcaggcgggttagggacttcttggaa
ggactgatgacacccttccgcatcgggccaaaccacattcagattggccttagccaatat
agtggagacccgcgaacagagtggcagctgaacaacttcaccaccaaagaccaattggta
gaggcagtaaggaatttcagatataagggaggaaacactttcacaggccaagcgctgctc
cacgtcatggaggagaacatgagggccaaagcaggcgcacggtcagacacacccttcttc
cttgtgctcttgactgatggtaaatcgcaggatgacgccattgcggcggcaaaccgactg
aagaatgtgggtgtggaaattatcactgtaggtgttaagaatgccgatgaagccgagttg
aggcaagtggcttcagagccggtggatgtgaatgtgttcaatgtcaacgacttcccacta
ctcagcaaactggtggcccgactagtccacatcctgtgcgggaggatagaggaccgtgga
atcataaagcaaagtgaaccagagcccacagtagaccctaccctctcttacccgagtccc
actgacctccggttctccaacctgggttccagagaggtgatgctacactggaccaaccca
gctaagctagtccagcaatacagggtggtctaccacagtgccgagggttcaagtcctcag
gaggtggtgttggatggctcagagtcttctgtgcttctccaaagcctctcctctcagaca
ctttatcatgtgtccattttccctgtgtatgaacacagcgttgggctggcactcagggga
actgtcaccacagtaccactctccatgccaaccaacttggaggtgacgccttcctcttat
agcacactgcgcgtgagctgggctacagcaccgggggctactgaatacctgatcctctac
tcggcactcaacgacggagagcccgatgacgccaaggaggagaagtttggtgcagagctg
acaatgttggagctgtccagtttacttcctgcaacggactactcagtcacactttatgct
ctctatgatgaagattccagtgatccggtcactgctatcgctacaacatttcctctccct
ccacctgtgagcgtgcacttcccagtggtaacccacagtatgctgagggtgagctgggtg
cctggagccgaggacgtccccgggcacagaataacttacagcactaaccatggcagtgaa
gtcaagcaggtagaggtcactggacaaagctcagtgctggtgcagagcctgtcctctctg
tccaggtatctggtgtcggtcaggtctcactacccacaaggcctttctgcagccctcacc
agtaacatcactacattgaaggtaccctccccttcagacctgagggtgaccaatttttcc
ggtagtgaaatcaccgtacgttgggaggctgccgctgacgatgtcatctcctacctcatt
aagtggatctccctaggtggaggcgacttgagacagctgaaggtgagtggagagagtgaa
ggggtcgtcctggaggggatggaggatgacaaagaataccagatctccctgtctgcactg
tatggcgatggagctcaaagtgaagctgtggctatacgctatagcacactgtctggtgga
ggcccgtccagtgtgtctgtctctgaggaaacaccggtcagcatgatggtcagctgggtt
ccccccaatgctcatgtcttgcagtatcgtgtctcttacagtgcactgacaagaactgag
aaccaggacagcgctgtgttggtgccaggtggtgaaaagcacatggtgctggactcgtta
cagccagacacacgatacagcatcctggtcactgccgagtaccgcaacaaagaaggaggc
agtggttctactcagggcaaaaccaccagtctacgagtaagcagtgtgagtgttgtgcga
tcagaccactccagtatctgtgtgtcttggagacccctgtcagttgttgatggctaccgt
attgtcattcagtctgtcaaagacaaagtgtcaatggaagaaaacgtggacgagtccagc
agcactcagtgtttcagcgggctacaggctgagacgctgtaccgcatcagtgtgcactca
attcttggatcagcagagggtgctgccgtctccattttacatccaacagctcaagcccca
gctaaaattcctgtcaatcctcggctctaccctattcataacgaagtttgtcctgaagtc
accatcagaaacagaattgttaaaggctttgacatgatggaagcgtttggcctcactcca
aaagctcactcgtctgtagatggggtcgccgcagaaccttttgtattcaacacgctgccc
gcctacactttgtacagagatatccaactgacacaaagcaccaagttcatccaccctgta
ggcttctctcccgagcataccatcagcatcaccttccgcctgctgcaggaaactcccaaa
gagcccttcgccctctggcagctcactgataatgacttccagcccaagatgggagtagtg
ctggacccctccaccaagcagctggtgtacttaagtctggattacagaggagaagtgcaa
gagttgacctttgaccagccacaggtccataggctgttctatggtagttttcacaaggtg
cacctgtctgtcagccaggtgggcgtctccttgtctgtggattgccagcgtgtgggtgac
aggcccgcacgccctctcggcacactgccgactgacggctttgaaatgctggggaaactg
gcgaggaccagaggacctaaaagtggctctgctgcgttccagttgcagtcgtttgagata
gtgtgtaacacaacgtgggcagcagaggacgcctgctgcgacctgcctgcgttgagagac
gaggaaagttgtcctcctctggcctactcgtgtacctgctcctccgacgtaccaggagct
gctggttcccccggtcctgtgggtaagcctggtccccgtggtgagaaaggtgataagggt
caacaaggacacaagggtgaaatgggtcctccaggaaaacctggacttgagggaggtctt
ggagcggtgggcagcagagggccccagggaatgactgtgcaagggaaagtaggtccacct
ggggaaagaggagaaaagggagaacctggaagagctggactacagggtctacctggccct
ccaggcccaaaaggtgaagatggccccctaggccctaaaggcatccgaggtgttgaaggc
aacatgggtcccactggccccgctggatcaaggggcttccagggcatgccaggacacccg
ggacacactggggagagaggcttcactggagcgagtggggctacgggtcttcccgggagt
aaaggggaacaaggaggaaagggagagcctcagtccatggccatgatctaccagcttgtc
acagaggcgtgtgaacaacttgttcacaaggaggtgaggaagttggacatgttcatcgat
gacatgagccggaagtcagctcctgtggaggagcccgtggggcctccaggggatccagga
ataccgggttccaggggtccaccaggctcaaggggcacccaggggaatattggcccccga
gggagacctggcagacttgggtatcctggagaacaaggaaggtcagggttgccagggcca
aaaggtgatgctggggccaatgtacagggggccccaggggtcagagggcatgcaggtcct
ttgggtgagtccaagattggaatgcctgggccaaaaggagaaaatggacagccaggacga
ccggggctccctggaactcccggccagccgggcgagatcggaccacccggagtgtgtgac
agcagtggaggctgccacccagttcctcagcaaacgggaggcccttattacgtctaccag
ccttga
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integrated database retrieval system
