Phycodurus eques (leafy seadragon): 133408002
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Entry
133408002 CDS
T09682
Symbol
clp1
Name
(RefSeq) polyribonucleotide 5'-hydroxyl-kinase Clp1 isoform X1
KO
K14399
polyribonucleotide 5'-hydroxyl-kinase [EC:
2.7.1.78
]
Organism
pee
Phycodurus eques (leafy seadragon)
Pathway
pee03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
pee00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
133408002 (clp1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pee03019
]
133408002 (clp1)
Enzymes [BR:
pee01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.1 Phosphotransferases with an alcohol group as acceptor
2.7.1.78 polynucleotide 5'-hydroxyl-kinase
133408002 (clp1)
Messenger RNA biogenesis [BR:
pee03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Pre-mRNA cleavage factor IIm (CFIIm)
133408002 (clp1)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
CLP1_P
Clp1
CLP1_N
TniB
ATP_bind_1
MMR_HSR1
AAA_22
AAA_16
CTV_P13
nSTAND3
CbiA
Motif
Other DBs
NCBI-GeneID:
133408002
NCBI-ProteinID:
XP_061542414
LinkDB
All DBs
Position
9:5935577..5965786
Genome browser
AA seq
488 aa
AA seq
DB search
MAPGAGRSGRKRKTENEEKEKPAKEAKGEEGVPPLEGLRVVIEHCIIMATESVEKTSEDA
LQAGKVGTRYDLEKETELRFEVEAGEAAEQVELELLTGMAEVFGSELNRNKKYTFGPGAK
IAVFTWQGCSVTLYGKPEVAYVSKDTPMLLYLNTHAALEQMRKQAERDNERGPRVMVVGP
TDVGKSTVCRMLLSYAVRVGRRPTLVELDVGQSGVSVPGTVSALCIERPADVEEGFSVQA
PLVYHFGSTSPGTNIKLYNKLTSCLAEVFSQRCEVNRKASVGGCIINTCGWVKGSGYQAL
VNCASAFEVDVVLVLDHERLYNELKRDLPHFVRVVLLPKSGGVVERSKECRREVRDEKIR
EYFYGFRGVSFYPFSFEVRFSDVRIYKIGAPSIPDSCLPLGMSQEDTQLKLVPVTPGRDL
TYHVLSVSTAEDGDEGARKGIVESPVCGFIVVTNVDTQAQVMKVLSPAPRPLPRHTLLIM
DIRFMDTK
NT seq
1467 nt
NT seq
+upstream
nt +downstream
nt
atggcgcctggagcaggccgcagtgggcgcaagcgcaagactgagaatgaggagaaggag
aaacccgccaaggaggcaaaaggagaagaaggggtccccccgctggaaggcctaagggtg
gttatcgaacactgcattatcatggcaacagagagtgtagaaaagacgagtgaggatgca
ttgcaagcaggtaaggttggcaccagatatgacttggagaaggagactgaacttcgtttt
gaggtggaggctggggaggctgcagagcaagttgagttggaacttctcacaggaatggca
gaagtgtttggctcagaattgaaccggaacaaaaagtatacttttggaccaggtgcaaag
atcgctgtattcacttggcaaggctgcagtgtgaccctttacgggaagccagaggtggct
tacgtgtccaaagatactcccatgcttctttacctgaacacacacgctgcattggagcag
atgagaaaacaggcagagcgagacaatgagagagggccaagggtgatggtggtgggacct
acagacgtgggcaagtcgactgtgtgtcgaatgttactgagctacgctgttagagtgggc
agaaggcccacgcttgtggaactggatgttggccagagcggggtgtcagtgccagggaca
gtgtcagcactgtgcatcgagcgtccagcagatgtggaggagggcttctcagtccaggct
cctttggtctaccactttggctcaacttctccagggaccaacatcaaactttacaacaag
ctgacatcctgcctggctgaagtgttttcccagcgctgtgaggtgaacaggaaggccagc
gttggtggctgtatcatcaacacatgtggctgggtgaaaggctctggttaccaggctctg
gtaaactgcgcctctgcctttgaggtagacgtggtgctggtactcgaccacgagaggctg
tacaatgaactaaaacgagatctccctcactttgtccgcgtcgtgctcctgcccaagtct
gggggagtggtcgagcgctccaaggagtgccgacgtgaggtacgggatgagaaaatccgt
gaatacttctacggcttccggggagtgtccttctaccctttctcatttgaagtgcgtttc
tctgatgttcgcatctataaaatcggggcaccttccatccctgattcgtgcctgccactg
ggaatgtctcaggaggacacccaactcaagctggttcctgtgacaccaggaagagacctc
acctatcacgtgctgagtgttagcactgcagaggatggagacgaaggggcaagaaaggga
atcgtggagagtcctgtgtgtggttttattgtcgtgaccaatgtggacacacaagcacag
gtgatgaaagtgttgtccccagcacccagaccgctgcccagacacacactgctcatcatg
gacatacgtttcatggacaccaaatga
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integrated database retrieval system
