Phycodurus eques (leafy seadragon): 133408586
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Entry
133408586 CDS
T09682
Symbol
col2a1b
Name
(RefSeq) LOW QUALITY PROTEIN: collagen, type II, alpha 1b
KO
K19719
collagen type II alpha
Organism
pee
Phycodurus eques (leafy seadragon)
Pathway
pee04510
Focal adhesion
pee04512
ECM-receptor interaction
pee04518
Integrin signaling
Brite
KEGG Orthology (KO) [BR:
pee00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
133408586 (col2a1b)
04518 Integrin signaling
133408586 (col2a1b)
09140 Cellular Processes
09144 Cellular community - eukaryotes
04510 Focal adhesion
133408586 (col2a1b)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
00536 Glycosaminoglycan binding proteins [BR:
pee00536
]
133408586 (col2a1b)
Glycosaminoglycan binding proteins [BR:
pee00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
133408586 (col2a1b)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Collagen
COLFI
VWC
VWC2L_2nd
Motif
Other DBs
NCBI-GeneID:
133408586
NCBI-ProteinID:
XP_061543627
LinkDB
All DBs
Position
10:17778892..17838588
Genome browser
AA seq
1491 aa
AA seq
DB search
MFSFLDSRTLLLLAAAQVCLLAIVECQDDNQEDALSCLQDGQRFSDKDVWKPEPCRICVC
DTGTVLCDEIVCEELRDCPKPEIPFGECCPICAADPSPPIGTPGAKGQKGEPGDITDVVG
PRGPPGPLGPPGEQGQRGPRGENGEKGTPGPRGRDGEPGTPGNPGPPGPPGPNGPPGLGG
NFAAQMAGGFDEKAGGGAQMGVMQGPMGPMGPRGPPGPTGSPGPQGFQGSHGEAGEPGQA
GAMGPRGPPGPSGKPGDDGEAGKSGKSGERGPSGPQGARGFPGTPGLPGIKGHRGYPGLD
GTKGETGALGSKGESGAPGESGAPGPMGPRGLPGERGRPGPSGVAGARGNDGLPGPAGPP
GPVGPSGAPGFPGSPGSKGEAGPTGARGPEGAQGPRGESGTPGSSGPSGASGNPGTDGIP
GAKGSSGAPGIAGAPGFPGPRGPPGPQGATGPLGPKGTSGDPGITGFKGEAGPKGELGPA
GPQGAPGPQGEEGKRGPRGEPGAAGPIGPHGERGSPGNRGFPGQDGLAGPKGAPGERGPS
GASGPKGANGDPGRPGESGLPGARGLTGRPGDAGPQGKVGPSGAPGEDGRPGPPGPQGAR
GQPGVMGFPGPKGATGEPGKSGEKGLVGAHGLRGLPGKDGETGAAGPPGPSGPAGERGEQ
GQPGPSGFQGLPGPPGPPGEGGKPGDQGVPGEGGAAGATGPRGERGFPGERGAAGSQGLQ
GPRGLPGTPGTDGPKGAIGPAGGGGAQGPPGLQGMPGERGGSGIPGPKGDRGDLGEKGPE
GAPGKDGGRGLTGPIGPPGPGGPNGEKGESGPAGPSGAPGTRGAPGDRGETGPPGPAGFA
GPPGSDGQPGLKGEMGESGQKGDAGAPGPQGPSGAPGPAGPTGVFGPKGARGAQGPPGAT
GFPGAAGRVGPPGPNGNPGPAGPAGPSGKDGPKGVRGDGGPPGRQGDAGLRGPAGAPGEK
GDAGEDGPPGALGPSGPQGLGGQRGIVGLPGQRGERGFPGLPGPSGEPGKQGAPGGSGDR
GPPGPVGPPGLTGPAGEPGREGNPGSDGPPGRDGSPGIKGDRGNTGPTGAPGAPGGPGST
GPVGPTGKQGDRGEAGAQGPAGPPGAAGARGMPGPQGPRGDKGESGESGERGQKGHRGFT
GLQGLPGPPGQSGDQGATGPAGPSGQRGPPGPIGPSGKEGTNGMPGPIGPPGPRGRGGET
GPSGPPGNPGSPGPPGPPGPGIDMSAFAGLGHTEKSPDPLRYMRADQASGNLRQHDAEVD
ATLKSLNNQIENIRSPEGSKKNPARTCRDLKLCHPDWNSGEYWIDPNQGCTVDAIKVFCN
METGESCVRSKPSSIPRKNWWSSKSKDRKHVWFGEIMNGGFHFSYGDDNLAPNTAAIQMT
FLRLLSTEASQNITYHCKNSVAYMDASAGNLKKAVLLQGSNDVEIRAEGNSRFTYSVMED
GCTRHTGKWGKTVLEYRSQKTSRLPVVDIAPMDIGGADQEFGVEVGAVCFL
NT seq
4476 nt
NT seq
+upstream
nt +downstream
nt
atgttcagcttcctggattcaaggactctactgctacttgcagctgcacaagtgtgccta
ttagccattgtcgaatgtcaggacgataaccaggaggatgctcttagctgcttgcaggac
ggccagcgctttagtgacaaggacgtgtggaagcccgagccgtgtcgcatctgcgtgtgc
gacaccggaaccgtcctgtgtgacgaaatagtctgcgaggagctcagagactgccccaag
cccgaaatcccattcggagagtgttgccccatctgcgccgctgacccatcgccgcccatt
ggaacacctggagcaaagggccagaaaggtgaaccaggagatattacagatgtcgtagga
ccaagaggaccacctggcccattgggcccaccaggagaacagggacagcgaggaccaaga
ggagaaaacggagagaagggaacacccggtcctcgtggcagagatggcgagcctggcacc
cccggaaaccctgggccccctggaccaccaggacctaatggaccccctgggcttggcgga
aattttgctgctcagatggcgggtggcttcgacgagaaggccggcggtggcgctcagatg
ggcgtgatgcaaggacccatgggcccaatgggtccccgaggaccacctggccctactgga
tctcctggccctcaaggattccaaggcagccatggagaggctggagaacccggacaagct
ggcgccatgggaccccgtggaccccctggaccctctggaaaacctggagatgacggtgag
gctggcaaatctggaaaatcaggcgagcgtggaccttctggaccgcagggagctcgcgga
tttcccggaacgcccggcctgcctggcatcaagggacatcgaggataccctggtcttgat
ggtactaagggagagaccggtgctcttgggtcaaagggagagtctggtgctcctggagag
agcggcgctcctggaccaatgggacctcgaggtctgcccggggagagaggtcgccctgga
cccagtggcgttgctggtgcccgtggtaatgatggtttgcccggtcctgctggtcccccg
ggcccggtcggtccttctggagctcccggcttccctggttctcctggttcaaagggagaa
gctggtcccactggtgctcgtggacccgaaggtgcgcaggggccccgtggagagtccggc
acgcccggatcatctggaccttcaggcgcttctggaaaccccggtactgatggtatcccc
ggagctaaaggatcatcaggtgctcccggtatcgcaggtgctcccggtttccccggacct
cgcgggcctcctgggcctcagggagcgaccggacctctcgggccaaaaggaacatctgga
gatccaggtatcacaggcttcaagggagaggcaggacctaaaggagagcttggaccagct
ggtcctcagggagcccccggcccacaaggagaagaaggcaagagaggacccagaggcgaa
cccggtgctgctggaccaattggacctcacggagagagaggatctcccggtaaccgcggt
ttcccaggtcaagatggtctggctggtcccaagggtgcccccggtgagcgtggaccctcc
ggtgccagtggtcccaagggtgctaacggtgaccccggccgtcccggagagtccggtctt
cccggtgccagaggtcttactggacgtcccggtgacgctggtccccaaggcaaagtcgga
ccttctggagcgccgggtgaagacggccgaccgggacctcctggcccacagggcgcccgt
ggacagcctggcgtcatgggattccccggccccaaaggagcaactggcgagcctggcaaa
tctggagagaagggattggttggagctcatggtctgagaggtctgcctggcaaagatgga
gaaactggtgccgccggaccccccggtccttctggacccgctggcgagagaggagagcaa
ggtcaacccggtccctctggtttccagggtctgcccggcccccctggtccccccggtgag
ggaggcaagcctggagatcagggggttccaggagaaggcggagctgccggtgccactgga
cccaggggagagcgaggcttccccggagagagaggagccgccggttctcagggtctgcag
ggaccccgaggcctgccaggaacccctggaactgatggccccaagggagctatcgggccc
gctggaggtggcggagctcagggaccccccggtctgcagggtatgcctggagagagagga
ggatccggtattcccggacccaaaggagacagaggtgaccttggagagaagggacctgag
ggtgctcctggaaaagatggtggcaggggtcttactggtcccatcggccctcctggtcct
ggcggtcccaatggtgaaaagggtgaatccggtcctgctggtccttctggagctcctggt
acccgtggtgctcctggtgaccgaggtgagactggacctccagggcctgctggatttgct
ggaccccctggctctgacggacaacccggactcaagggagagatgggagagtctggccag
aagggtgacgctggtgcccctggaccacaaggaccatcaggtgcacctggacccgctggc
cctactggtgtttttggacctaaaggagcacgcggcgctcagggaccgcccggcgccacc
ggttttcctggagccgctggccgtgtcggaccccccggtcccaatggcaatcctggaccc
gctggtcccgcaggcccctctggcaaagacggccccaagggcgtgaggggagacggcggc
cccccaggtagacagggcgacgctggacttcgcggtccggctggggctcctggagagaag
ggagacgctggagaggacggtccccctggtgctctaggtccctccggccctcagggtttg
ggcggtcagcgtggtatcgtgggtttgcctggacagcgcggcgagagaggtttccccggt
ctgcctggaccctctggtgagcctggaaagcaaggagctcccggcggcagcggagaccgc
ggaccccccggacccgtcggaccacccggactcaccggacctgcaggagagccaggcaga
gagggcaatcctggatctgatgggcctcctggtagagacggttctccaggaatcaagggt
gaccgcggtaacactggtcctactggcgctccaggtgcaccaggcggtcccggttccacg
ggcccggtcgggcccaccggaaaacagggagacagaggagaggctggtgcacaagggccc
gccggacctccaggagctgctggagcccgagggatgcccggaccccaaggacctcgcggt
gataagggtgaaagtggagagtctggcgagagaggacagaagggacacagaggcttcact
ggtctgcagggtctgcctggacctccaggtcaatctggagaccagggtgctactggacct
gctggaccttctggacagagaggaccacctggtcctatcgggcccagtggaaaggagggt
acaaacggtatgcccggacccatcggaccgcccggacctcgaggtcgcggtggagagacc
ggtccttcaggtcctcccggaaaccccggatctcccggtcctcccgggcctcccggcccc
ggcatcgacatgtccgccttcgccggcctgggtcacacggagaagtctcccgatcctctc
aggtacatgagagccgaccaggcctccggaaacctgcgacagcacgacgccgaggtggac
gccacgctcaaatccctcaacaaccaaatagagaacatccgcagtcctgagggctccaag
aagaacccggctcgcacctgtagagacctcaagctctgccatcccgattggaacagcgga
gagtactggatcgaccccaaccagggctgcaccgtggacgccatcaaggtgttctgcaac
atggagacgggcgagtcctgtgtccggtccaaaccgtccagcatcccgcgcaagaactgg
tggtccagcaagagcaaagaccgcaaacacgtgtggttcggagagatcatgaacggagga
ttccacttcagctacggcgacgataacctagcgcccaacacggccgccatccagatgacg
ttcctgcgcctgctttccaccgaggcctcccagaacatcacctaccactgtaagaacagc
gtggcctacatggacgcttcggcgggcaacctgaagaaggccgtgctgctgcagggctcc
aacgacgtggagatccgcgccgagggcaacagccgcttcacctacagcgtcatggaggac
ggctgcacgagacacacgggcaagtggggcaagacggtcctggagtaccggtcgcagaag
acctcccgccttcccgtcgtggacatcgcacccatggacatcggtggtgccgaccaggag
tttggagtggaagtgggcgccgtgtgcttcttgtaa
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