Phycodurus eques (leafy seadragon): 133409550
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Entry
133409550 CDS
T09682
Symbol
col2a1a
Name
(RefSeq) collagen, type II, alpha 1a isoform X1
KO
K19719
collagen type II alpha
Organism
pee
Phycodurus eques (leafy seadragon)
Pathway
pee04510
Focal adhesion
pee04512
ECM-receptor interaction
Brite
KEGG Orthology (KO) [BR:
pee00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
133409550 (col2a1a)
09140 Cellular Processes
09144 Cellular community - eukaryotes
04510 Focal adhesion
133409550 (col2a1a)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
00536 Glycosaminoglycan binding proteins [BR:
pee00536
]
133409550 (col2a1a)
Glycosaminoglycan binding proteins [BR:
pee00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
133409550 (col2a1a)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Collagen
COLFI
VWC
Motif
Other DBs
NCBI-GeneID:
133409550
NCBI-ProteinID:
XP_061545691
LinkDB
All DBs
Position
1:34889667..34910574
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AA seq
1487 aa
AA seq
DB search
MFSFVDSRTVLLLVASQVVLLTVVRCQEEDDHEAGGCIQDSQLFHDKDVWKPEPCRICVC
DSGAVLCDEIICEEMKECANPIIPSGECCPMCPADASAHIETIGTRGQKGEPGEIADVVG
PRGPAGPMGPPGDQGVRGPAGAKGDKGNAGPRGRDGEPGTPGNPGPAGPPGPPGLGGNFA
AQMATGFDEKAGGAQMGVMQGPMGPMGPRGPPGPSGAPGPQGFQGAPGEAGESGPAGAMG
PRGPLGPSGKPGSDGEAGKPGKAGERGPAGPQGARGFPGTPGLPGIKGHRGHPGLDGAKG
ETGAAGAKGEAGTSGENGAPGPMGPRGLPGERGRTGAAGAAGARGNDGLPGPAGPPGPVG
PAGAPGFPGSPGAKGEAGPTGARGAEGQQGPRGEAGTPGSPGPAGASGNPGTDGIPGAKG
SAGGPGIAGAPGFPGPRGPPGPQGATGPLGPKGQSGDPGLPGFKGEAGPKGELGPAGPQG
APGPSGEEGKRGARGEPGAAGPLGPPGERGAPGNRGFPGQDGLAGAKGAPGDRGVPGAAG
PKGGTGDPGRTGESGLPGARGLTGRPGDTGPQGKVGPSGAAGEDGRPGPPGPQGARGQPG
VMGFPGPKGANGEPGKPGEKGLLGRTGLRGLPGKDGETGSAGPPGPAGPAGERGEQGQPG
PSGFQGLPGPTGSPGEAGKPGDQGVPGEGGAPGTVGPRGERGFPGERGGAGPQGLQGPRG
LPGTPGSDGPKGAIGPAGAAGSQGPPGLQGMPGERGAGGIPGAKGDRGDNGAKGPEGASG
KDGSRGLTGPIGPPGPAGPNGAKGETGPAGPSGAPGVRGAPGDRGEGGPPGPAGFAGPPG
ADGQPGVKGELGESGQKGEAGTSGPQGPSGAPGPVGPTGVSGPKGARGAQGAPGATGFPG
AAGRVGSPGPNGNPGSVGPAGSAGKDGPKGARGDAGPPGRQGDAGLRGPGGAQGEKGEPG
EDGPPGADGPSGPQGLAGSRGIVGLPGQRGERGFPGLPGPSGEPGKQGSPGSGGDRGPPG
PVGPPGLTGPAGETGREGTPGSDGPPGRDGSVGIKGERGNTGPAGAPGAPGAPGAPGPVG
PLGKQGDRGESGAQGPAGPPGLAGARGMAGPQGPRGDKGESGEAGERGQKGHRGFTGLQG
LPGPPGSAGDAGASGPAGPSGAKGPHGPSGPAGKDGSNGQPGPIGPPGPRGRSGESGPPG
PPGNAGPPGPPGPPGPGIDMSAFAGLGQTEKSPDPLRYMRADEASSSLRQHDVEVDSTLK
SLNNQIENLRSPDGSQKNPARSCRDLKLCHPEWQSGDYWVDPNIGSIADAIKVFCNMETG
ETCVYPSIPNVPKKSWWTSKSKDRKHIWFGETMNGGFHFSYAQDGPAANAASVQLTFLRL
LSNEASQNLTYHCKNSIAYMDQATGNLKKALLLQGSNDVEIRAEGNSRFTYSVLEDGCKK
HAGRWGKTVFEYKTQKTSRLPIVDIAPMDIGGADQEFGVDVGPVCFL
NT seq
4464 nt
NT seq
+upstream
nt +downstream
nt
atgttcagctttgtggattcaaggactgttctgctacttgtagcatcccaagttgtttta
ctgaccgtggtcaggtgtcaggaagaggatgaccacgaggcaggtggctgcatccaggac
agccagctgtttcatgataaggatgtgtggaagccagagccgtgtcgaatctgtgtgtgt
gacagcggagcggttctgtgtgatgagataatctgcgaggagatgaaggagtgtgccaac
cctatcatcccatctggagagtgctgtcccatgtgccccgccgatgccagtgcccacatt
gagacgatcggcacgaggggtcagaaaggtgaaccgggcgaaattgcagatgtagtagga
ccaagagggccagcaggccccatgggccccccaggtgaccagggagtacgtggaccagct
ggtgcaaagggtgacaagggaaatgctggacctcgtggaagggatggcgagcctggcacc
cctggaaaccctggaccggctggcccacctggacccccaggacttggagggaactttgca
gcccagatggctacaggttttgacgagaaggccggaggtgctcagatgggagtgatgcag
ggaccaatgggtccaatgggtccccgtggcccccccggaccaagtggagcccctgggcca
caaggtttccagggtgcccctggagaggctggagagtccggtccagctggagcaatggga
ccccgtggaccacttggaccttctggaaaaccaggaagtgatggtgaggctggcaaacct
ggcaaagctggtgagcgtggacctgctggacctcagggagctcgtggatttcctggaaca
cctggccttcctggaatcaaaggacacagaggtcaccccggtctggacggagctaaggga
gagaccggtgctgcgggagcaaagggtgaggctggtacatctggagagaatggcgcccct
ggacctatgggcccacgaggtctgcctggtgagaggggacggaccggtgctgctggagct
gcaggtgcccgtggaaatgatggcttgcccggtcctgctggtccacctgggcctgttggt
cctgctggggctcccggcttcccaggatctccaggagcaaaaggtgaagctggtccgact
ggagcccgtggagctgaaggccaacagggtccccgtggagaggctggtacaccaggatct
cccggacctgccggagcgtcgggtaaccccggaactgatggcattcctggagccaaagga
tctgctggtggtcctggtattgctggtgcccctggcttccctggcccccgtgggccacct
ggaccacaaggtgcaacgggccccctgggacccaaaggacagtctggtgaccctggtctt
cctggattcaaaggtgaagctggacccaagggagagcttggccccgccggtccccaaggt
gcacccggcccatctggtgaggaaggaaagagaggtgctagaggagagcccggagctgct
ggaccacttggacctcccggagagagaggagctcctggcaaccgtggtttcccaggtcag
gatggtcttgctggtgctaagggtgccccaggtgaccgtggtgttcctggtgctgcgggg
cctaaaggtggaacaggggacccaggacgcacaggagagtctggtcttcctggagcaagg
ggtcttactggccgtcctggagatactggtcctcagggcaaagttggaccttctggtgcc
gctggtgaggacggtcgccccggaccccctggcccacagggagcccgtggacagccagga
gtgatgggattccctggaccaaaaggagccaatggtgagcctggaaaacctggagagaaa
ggtcttctgggtcgcactggtctgagaggcctgcctggaaaagatggcgagactggatct
gctggaccaccaggccccgctggacctgctggagagagaggagaacaaggtcagcctgga
ccttctggcttccagggtctgcctggaccaactggttcccctggagaggctggaaaaccc
ggagaccagggtgttccaggagagggtggagctcctggtactgttggacccagaggtgaa
cgtggtttccctggcgagaggggtggtgctggtcctcagggtcttcagggacctcgtgga
cttcccggaacacctggaagtgatggacccaagggagccattggacctgctggagctgct
ggatctcagggaccccctgggctgcagggtatgcccggagagagaggagccggtggcatc
ccaggagccaaaggagacagaggtgataatggggctaagggacctgaaggagcttctgga
aaggatggttctagaggtttgactggtcccattggtcctcctggccctgctggacccaac
ggtgccaagggtgaaactggaccggcgggaccttccggtgctcctggcgtccgtggtgct
cctggtgaccgtggtgaggggggtcctcctgggcctgctggctttgctggacctcctggt
gcagatggtcagcctggagtcaagggagagcttggtgagagcggacagaagggagaggct
ggcacttctggacctcaaggaccatcaggagcacccggacctgtgggcccaactggtgtt
tctggacctaaaggagcacgtggtgctcagggagctcctggtgccactggtttccctggt
gctgctggtcgagttgggtctcctggccctaatggtaaccctggctctgttggacctgct
ggttctgctggcaaagacggaccaaagggtgctcgtggtgatgcaggacccccaggaaga
cagggagatgctggtcttcgaggacccggtggtgcacaaggagaaaagggagaacccgga
gaagatggaccgcctggtgctgatggaccttcagggcctcagggtttggctggatctcgt
ggtattgttggtttgcccggacagcgtggagagagaggcttccctggtcttcctggacct
tctggtgaacctggtaaacaaggatctcctggctctggtggtgaccgtggacctcctgga
cctgtaggaccccctggacttactggacctgctggagaaactggaagagagggtactcct
ggatcagatggaccacctggtagagatggatctgttggaatcaagggagagcgaggtaac
actggacctgctggtgccccaggagctccgggtgcccctggtgcccctggccccgtcgga
cctcttggcaagcagggagacagaggagagtctggtgcacaaggacctgcaggacctcct
ggactcgcaggtgcacgaggaatggctggaccccaaggaccacgtggagataagggagag
agtggtgaggctggcgagagaggacagaagggtcaccgtggattcactggtctgcagggt
cttcctggacctcccggttccgctggagatgctggcgcttctggacctgcaggaccaagc
ggagctaagggcccacacggaccatccggtcccgctggcaaagatggatctaacggacaa
cctggccccatcggaccacctggacctcgtggacgctctggagaaagtggtccacctggt
cctcctggaaacgctggaccccctggtcctcctgggcccccaggccctggcattgacatg
tctgcctttgctggcttgggccagactgagaagtctcctgatccactgaggtacatgaga
gctgatgaggcctctagctccctgagacagcacgatgttgaggttgattccacactcaag
tcgctcaacaaccagatagagaacctgcgtagccctgacggctcccagaagaaccctgct
cgctcctgtagagaccttaaactgtgccaccctgagtggcagagtggtgactactgggtt
gaccccaacatcggaagcatagctgatgccatcaaggtcttctgcaacatggagaccggc
gagacctgcgtctacccaagtatccccaatgtaccaaagaagtcttggtggaccagcaag
agcaaggatcgtaagcacatctggtttggagagacgatgaatggaggattccactttagc
tacgctcaggatggccctgctgccaacgctgccagcgttcaattgaccttcttgagactc
ctttccaatgaggcatcccagaatctcacgtaccactgcaagaatagcattgcctacatg
gatcaggccacaggcaacctgaagaaggctttgctgctgcagggctccaacgatgtagag
atccgtgcggagggcaacagtcgcttcacatacagcgtgttggaggatggctgcaagaaa
cacgcaggccggtggggaaaaactgtcttcgagtacaaaacacagaaaacctcccgtctg
cccattgtggacattgctcctatggatatcggaggagcagatcaggagtttggtgtggat
gtaggcccagtctgcttcttgtaa
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integrated database retrieval system
