Phycodurus eques (leafy seadragon): 133411031
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Entry
133411031 CDS
T09682
Symbol
upf3a
Name
(RefSeq) regulator of nonsense transcripts 3A isoform X1
KO
K14328
regulator of nonsense transcripts 3
Organism
pee
Phycodurus eques (leafy seadragon)
Pathway
pee03013
Nucleocytoplasmic transport
pee03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
pee00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
133411031 (upf3a)
03015 mRNA surveillance pathway
133411031 (upf3a)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pee03019
]
133411031 (upf3a)
Messenger RNA biogenesis [BR:
pee03019
]
Eukaryotic type
mRNA surveillance and transport factors
Surveillance factors
Surveillance complex
133411031 (upf3a)
mRNA cycle factors
P-body specific factors
133411031 (upf3a)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Smg4_UPF3
RRM_1
PagP
Motif
Other DBs
NCBI-GeneID:
133411031
NCBI-ProteinID:
XP_061548816
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Position
12:complement(1398439..1407491)
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AA seq
511 aa
AA seq
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MRSDKEQMTASKDKGVVEIKFRDASGEQDNIPKHKEEKKELFTKVVIRRLPPHLTKEQLE
EQLSPLPSYDYFEFFPADPSLYPHLFSRAYINFKNQEDILLFRDRFDGYVFIDSKGQEFP
AVVEFAPFQKVSKKKLKKKDAKAGSIEEDPEYKRFLENYSCDEEKSMANPETLLGEIEAK
TRELIAKRTTPLLEYIRNKKMEKQRMREEKREERRRREFEKKRQREEEKRKRREEERRKR
KEADKQKKLSDKDVKIKLLKKSDRDDDDADSDRVKDKSDVGETERGKWEKAGGQMKLKDS
KENRGQPESDKEQQQCRRPRDKEHRGKDDDRKRQRHHYDFDKFARRKDETKWGKGYCQDR
AKKEGHHHAYAFCPDSGDKQTKEDRDELANRKERLRNKVSEKDWTGTVLNFQMKTGRPCS
CTSPAREIARELTRPAKATTACRRPTRPRATRGVASMWRRCWTEPLTTATMSTDTRKTTS
VVHSGGFQTDHHRISFQTVYITFSYLGTVQI
NT seq
1536 nt
NT seq
+upstream
nt +downstream
nt
atgaggtctgacaaagagcaaatgacggccagcaaggacaagggcgtcgtggagatcaag
ttcagggacgcctcgggagagcaggacaacattcccaagcacaaagaagagaagaaagag
ctttttacgaaggtggtcattcgaaggctcccccctcacctgaccaaggagcagttagaa
gaacaactcagcccgcttccttcctatgactactttgagttcttccccgctgatccgagc
ctgtacccacatctgttctccagagcctacatcaactttaaaaaccaggaagatatcctt
ctgttccgagacagattcgatggctacgtcttcattgacagcaaaggtcaggagtttcct
gctgtggtcgaatttgcccccttccagaaagtctccaagaagaagctcaaaaagaaagat
gccaaagctggaagtatcgaggaagacccggagtataagcgcttcctggagaactactcc
tgtgatgaggagaagtcgatggccaacccagagaccctgctgggggaaatcgaggccaaa
accagagaactgatagccaaaaggacaacacccctgttagagtacatcagaaacaagaag
atggagaaacagagaatgcgagaggaaaagcgagaggagcgtcgacggcgagagttcgag
aagaagcgacaacgcgaggaggagaaacgcaagcgacgcgaggaggagaggcgcaaacgc
aaagaagccgacaagcagaagaagctgtcggacaaagacgtcaaaattaagctgctgaag
aagagcgaccgggacgacgacgacgccgactcggaccgcgtcaaggacaaaagtgacgtc
ggcgagacggagagaggaaaatgggaaaaagcaggtggccagatgaagttgaaggattcc
aaggaaaacagaggtcagccggagagcgacaaggagcagcagcagtgccgccgaccgcgc
gacaaggagcaccgcggcaaagacgacgacaggaagcgtcagaggcaccactacgacttt
gacaagttcgcacggcgcaaagacgagaccaagtggggcaagggctactgccaggaccgc
gccaagaaggagggccatcaccacgcctacgccttctgccccgacagcggcgacaagcag
accaaggaggacagggacgagctggccaacaggaaggagcgcctccgaaacaaggtgagc
gagaaggactggactggaactgtattgaattttcaaatgaagaccggccggccatgcagc
tgtaccagcccggcgcgcgaaatcgcaagggagttaactcggcctgcaaaagctacgacg
gcgtgccggcggcccactcgcccgagggcgacgcggggggttgcttcgatgtggagacgg
tgctggacggagcctttgacaacggcaacgatgagcacggacactcgtaagacgacgtca
gtcgttcacagcggaggctttcaaaccgatcaccatcgtatttcttttcagactgtgtac
attacattcagttatttgggaaccgttcaaatatga
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