Phycodurus eques (leafy seadragon): 133411091
Help
Entry
133411091 CDS
T09682
Symbol
col4a1
Name
(RefSeq) collagen alpha-1(IV) chain isoform X1
KO
K06237
collagen type IV alpha
Organism
pee
Phycodurus eques (leafy seadragon)
Pathway
pee04510
Focal adhesion
pee04512
ECM-receptor interaction
pee04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
pee00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
133411091 (col4a1)
09140 Cellular Processes
09144 Cellular community - eukaryotes
04510 Focal adhesion
133411091 (col4a1)
09142 Cell motility
04820 Cytoskeleton in muscle cells
133411091 (col4a1)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
pee04147
]
133411091 (col4a1)
00536 Glycosaminoglycan binding proteins [BR:
pee00536
]
133411091 (col4a1)
Exosome [BR:
pee04147
]
Exosomal proteins
Exosomal proteins of other cancer cells
133411091 (col4a1)
Glycosaminoglycan binding proteins [BR:
pee00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
133411091 (col4a1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Collagen
C4
Cry1Ac_D5
Motif
Other DBs
NCBI-GeneID:
133411091
NCBI-ProteinID:
XP_061548959
LinkDB
All DBs
Position
12:4114798..4181383
Genome browser
AA seq
1669 aa
AA seq
DB search
MAEDAERAPPLSERKHRPRHRCSFLRTRVLVFADAAHMALPAGIILLLLAVSSSVDFATA
EGCGASCGKCDCSGVQGAKGERGLPGLQGNMGFPGMQGHEGPPGPIGPKGDSGQFGAPGI
KGVRGPPGLPGFPGNPGLPGINGNDGPPGAPGIPGCNGTKGEPGFGLRGPPGNPGLPGIK
GDPGGAIGIIPLKGDRGFPGTPGLPGGSGPPGPVGPPGPRGYIGPKGDAGPPGPPGEKDD
KLFFESEKGDKGERGFRGPPGPPGPPSPGVEGPGTEFIGPPGNRGYPGEKGEKGFCNISM
NGVKGDPGPPGPLGKPGKEGDEGRKGEKGFPGNSGYPGLQGEKGERGPAGYASGAPGPPG
PRGLPGLQGEKGFHGPPGEAGPPGRYHEGPRGETGQKGDEGQKGDRGVEGESLFGPPGQP
GLEGPPGLPGLPVDPNECTNAKGAPGPSGPPGLQGELGQKGDKGETCILCEGFGPAGLPG
PQGLKGERGPPGPVGSKGDKGHSGPSGTPGRPGNGGIPGLIGAPGAVGEPGDIFIAPGLK
GDKGFPGPSGSPGQPGLDGLPGSDGLPGVPGYKGEPGKVRIKGDRGLIGDPGLTGPPGER
GSPGLPGYGRPGVPGDKGSQGRSGIPGSPGASGAKGEPGQGVSTPGPQGAPGPRGEPGRD
GPHGPTGPQGDSGIHGFPGQKGDQGPPGIGFPGPTGAKGISGIPGAPGLPGETGRPGQDG
ISGQPGPQGHKGEPGMGLPGQKGSQGPPGIIGFPGDKGNTGLPGIPGRVGLTGPPGLQGV
KGTIGPPGPAGVIGLPGAPGKGLPGAPGPQGQPGEPGPFGRVGDKGESGYPGPPGIGMPG
PQGEKGLTGFPGAPGVKGLPGPSGLPGRDGLIGKQGTKGEMGVIGTPGLPGFPGPPGLSG
SQGLRGDHGLPGSRGQAGESGLKGERGETGLQGPPGNMSKVDMEHMKGNKGDLGDPGNPG
ITGQKGFRGLPGDPGMPGKNGEPGLAGQPGQKGDSGVLGEPGSMGPPGQKGSAGEMGIPG
PVGPKGLKGGVGTPGHPGFRGADGEKGEQGTPGEPGIGLPGFPGEQGQPGQSGLPGPRGE
KGLKGHFGMPGMPGLQGAKGDKGIFGTPGQPGIPGEKGVPGLPGSAGEPGQDGQLGESGL
SGPPGPPGEKGEAGVDGIPGSSGERGDPGLPGLSIPGPTGELGSKGDKGSPGFPGTPGYP
GVPGIKGDKGLTGFQGRQGEPGEIGLPGISLEGTKGNQGENGQPGEPGIIGAPGLSGVPG
RDGQKGDKGDHGLPGFQGESGQKGDTGTPGFPGPAGLSGVHGPKGESGLQGVPGFPGTKG
NQGDFGFKGELGDRGFQGEKGNVGPPGPPGPHTFIKGDVGHPGITGLPGPQGPAGFPGQK
GQQGLTGLPGPKGEDGLPGYHGQAGSKGNSGLPGPQGPRGYPGPPGPDGVPGQVGPPGPS
SMDHGFLVTRHSQTVEVPVCPEGTSPIYDGYSLLYVQGNERSHGQDLGTAGSCLRKFSPM
PFLFCNINNVCNFASRNDYSYWLTSPEPMPMSMAPITGESIKPFISRCAVCEAPAMVIAV
HSQTIMIPACPYGWDSLWIGYSFVMHTSAGAEGSGQALASPGSCLEEFRSAPFIECHGRG
TCNYYANSYSFWLATIEDSEMFTKPVPTTLKAGNLRTHISRCQVCMKRT
NT seq
5010 nt
NT seq
+upstream
nt +downstream
nt
atggctgaagatgcagagcgcgctccgccgctgagcgagaggaagcacaggccgagacac
aggtgctcgtttttgcggacgcgggtgctcgtttttgcggacgcggcacacatggcgctg
cccgccggcatcatcctgctcttgctggctgtctcgtcaagcgtggactttgccacggct
gagggctgtggagcatcatgcggaaaatgtgactgcagtggtgtgcagggagccaagggt
gagcgtggactccccggtcttcaaggtaacatgggattcccaggaatgcaaggacatgag
ggaccgcccgggccaatcgggcccaagggagattcagggcagtttggcgctcctggaatc
aaaggagtccggggtcctcctggtcttccaggtttcccaggaaatccaggactacctgga
atcaatggaaacgatggtccacctggtgcgccaggtatcccaggatgcaatgggacgaaa
ggagaacctggttttggtcttcgaggacctcctggcaacccaggtcttcctggaattaag
ggcgatccgggcggtgcgattggcattattcccctcaaaggagacagaggctttccgggc
acacctggacttcctggaggcagcggaccacccgggcccgttggtcctccaggacctcga
ggctacatcggacccaaaggtgatgccggcccacccggcccccctggagaaaaggatgac
aagctgttctttgagagtgagaaaggagataaaggcgagcgaggcttccgagggccgccc
ggccctcctggacccccttcgccgggtgtggaaggccctggcacagagtttatcggaccg
ccgggaaacaggggatatccaggggaaaaaggagagaaaggcttttgcaatatatctatg
aacggagtgaagggtgacccgggtcctccgggaccactaggcaaacctggcaaggaagga
gatgaagggcgaaagggagaaaagggcttccctggaaattctggataccctggactgcag
ggtgaaaaaggagaaagagggcctgctggatatgcaagtggtgcccctggtcctcctggt
ccccgtggtctccctgggttgcaaggagaaaaaggttttcatggacctccgggagaagca
gggcccccaggacgctatcatgaaggccctcgtggagagactggccagaagggagatgag
ggtcagaaaggagacaggggtgttgaaggagagtctttatttggacccccaggccaacca
ggcctagaaggaccccctggacttccagggctacctgttgaccctaatgagtgcaccaat
gcaaaaggagcccccggcccatccgggccaccgggacttcaaggagaattgggacagaaa
ggtgacaaaggagaaacttgcatcctatgtgaagggttcggacccgctggattgcctggc
ccccagggccttaaaggggagcggggacctcctggtccagtgggaagcaaaggcgataaa
ggtcattctggaccatcaggaactcctggaagacctggcaacggtggcattcctggtttg
attggagcacctggtgcagttggagagccaggagacatattcattgctcctggtcttaaa
ggagacaaaggcttccctggtcctagtggttcacctggacaaccaggtctagatggactc
ccagggagtgatggcctaccaggtgttcctggttacaaaggagaacctggcaaagtgcgc
atcaagggtgaccgtggattaattggggaccctggtcttaccggcccccctggggagagg
ggttccccaggtcttccaggctatgggcgacctggtgtgcctggagacaagggcagtcag
gggaggtctggcatccccggatcacctggagcatctggtgcaaaaggtgagccaggtcaa
ggtgtgagcacccctggaccacaaggtgcacctggaccacgaggagaacctggcagagat
ggccctcatggtccaacaggtccccaaggagactcaggaatacacggttttcctggacag
aaaggtgatcaaggaccaccagggattggatttccaggcccaactggtgcaaaaggaatc
agtggaattccaggagctccgggattgccaggagagacagggagacctggacaggacggt
atttctggacaacctggtccacagggacacaaaggtgaaccgggaatggggctcccaggc
caaaaaggttcacagggtcctccaggaattattggcttccctggagacaaaggtaacact
ggattacctggtattcctgggcgagtgggcctgacaggaccaccaggacttcagggagta
aaaggtaccattggaccccctggacctgctggagttataggattaccaggtgctccagga
aagggtttaccaggggccccaggaccacaaggacaacctggagagcccggtccatttggt
agggtaggtgataaaggagagagtggctatccaggcccccccggcattggcatgccaggg
cctcaaggagaaaaaggactcactgggttccctggagcccctggtgtaaaaggactgcca
ggaccatcaggcttgccaggaagggatggactgataggaaaacaaggtacaaaaggtgaa
atgggggtcatagggactccgggattgccaggatttcctggaccacccggtttatctgga
agtcaaggcttgagaggtgatcatggtcttcctggttcgcgaggacaagccggagagtct
ggacttaaaggagagaggggagagacagggctacagggacctccggggaacatgagtaaa
gttgacatggagcacatgaaagggaacaagggagaccttggagatccaggaaaccctgga
ataacaggacaaaaaggctttcgcggactacctggagatcctggaatgccaggaaaaaat
ggagaacctggtttagccggacagccaggtcagaaaggtgactctggcgttcttggagaa
ccaggcagtatgggaccaccagggcaaaaggggagtgcaggcgagatgggaataccaggt
ccagttggtccaaagggtcttaaaggaggtgtaggtacaccaggccatcctggtttcaga
ggagcagatggagagaaaggagaacaaggaacacctggtgaaccaggtattggtctccca
ggatttccaggagaacagggacaacccggccaatcaggactcccaggaccgcgaggagag
aagggtctgaagggtcactttggaatgcctggcatgccaggactgcagggagctaaggga
gacaaaggaatatttggcactccaggccagcccggtatacctggtgagaagggtgttcca
gggctgccagggtctgcaggagagcctggtcaagatggccagctaggtgagagtggtttg
tcaggacctcctggtccacctggagagaaaggagaagctggtgttgatggcattccggga
tcctcaggagagcgaggagaccctggtttacccggtcttagtattccaggacccacgggg
gagctaggtagcaaaggtgacaaaggtagtcccggcttcccaggcaccccaggctatccc
ggtgtgcctggtatcaaaggagacaagggacttaccggctttcaggggcgccaaggtgag
ccaggagaaattgggctcccaggaatctctctcgagggcacgaaaggaaatcagggtgaa
aatggacaacctggagaaccaggaatcattggcgcaccaggactttctggtgtgccaggc
cgagatgggcagaagggggataaaggagaccatggtctccccggtttccagggagagtca
gggcaaaagggtgacactggaacacctggatttcctgggccagctggtctttcaggtgtt
catggtcccaaaggagagagcggacttcagggggtgcccggtttcccaggtacaaaaggt
aatcaaggcgattttggattcaaaggagaacttggagacagaggatttcaaggagaaaag
gggaatgttggcccccctggtccccctggtccacacaccttcatcaaaggagacgttggt
cacccgggtatcacaggcttaccaggaccgcaggggccagctgggttcccaggacagaaa
ggacagcaaggtctgacaggtcttccagggccaaaaggggaagatggcctccctggatat
cacggtcaggcaggatccaaaggcaactctggtctgcctgggccacaaggacccagaggc
tatcctggaccaccaggacctgatggtgttcctggccaagtgggaccacctggcccctcc
tccatggatcacggtttcctggtgactcggcacagccaaacagtggaggttccagtttgt
cctgagggcacctcgcccatttatgatggctactcattgctctacgtgcaaggcaatgaa
cgctctcacgggcaagatctcggtacggcagggagctgtctaaggaagttcagcccgatg
cccttcttgttctgcaacatcaacaacgtctgcaactttgcctcccgtaatgactactca
tactggctcacctcgccagagcccatgcccatgagcatggcgccaattaccggcgaaagc
attaaacccttcatcagcaggtgtgcagtatgtgaagctccagccatggtgattgcggtt
cacagtcagaccattatgatccctgcgtgtccttacggttgggactctctgtggatcggc
tactcctttgtcatgcacaccagtgccggtgctgagggctcgggccaggctctggcatct
cccggttcctgcttggaggagttccgaagcgctccgttcatcgagtgccacggtcgcgga
acctgcaactattacgccaactcctacagcttctggcttgcgacgatcgaagacagcgag
atgtttacgaaacccgtgccaacgacactaaaagcgggaaatctgcgaacgcacataagc
cgctgtcaggtgtgcatgaagagaacataa
DBGET
integrated database retrieval system
