Phycodurus eques (leafy seadragon): 133411092
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Entry
133411092 CDS
T09682
Symbol
col4a2
Name
(RefSeq) collagen alpha-2(IV) chain isoform X1
KO
K06237
collagen type IV alpha
Organism
pee
Phycodurus eques (leafy seadragon)
Pathway
pee04382
Cornified envelope formation
pee04510
Focal adhesion
pee04512
ECM-receptor interaction
pee04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
pee00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
133411092 (col4a2)
09140 Cellular Processes
09144 Cellular community - eukaryotes
04510 Focal adhesion
133411092 (col4a2)
09142 Cell motility
04820 Cytoskeleton in muscle cells
133411092 (col4a2)
09150 Organismal Systems
09158 Development and regeneration
04382 Cornified envelope formation
133411092 (col4a2)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
pee04147
]
133411092 (col4a2)
00536 Glycosaminoglycan binding proteins [BR:
pee00536
]
133411092 (col4a2)
Exosome [BR:
pee04147
]
Exosomal proteins
Exosomal proteins of other cancer cells
133411092 (col4a2)
Glycosaminoglycan binding proteins [BR:
pee00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
133411092 (col4a2)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Collagen
C4
Motif
Other DBs
NCBI-GeneID:
133411092
NCBI-ProteinID:
XP_061548961
LinkDB
All DBs
Position
12:complement(4105095..4147395)
Genome browser
AA seq
1665 aa
AA seq
DB search
MRGHRNGHVTHLRLLLLCACVAVLIAGARAGGKKHSGPCRGRDCSGGCKCFPEKGARGQH
GPVGPQGIAGPPGRPGDPGIQGPKGHKGDTGRSGITGPKGNTGMTGVPGFSGNDGIPGHP
GQAGPRGKPGADGCNGTAGESGQTGAPGFPGQTGRKGEKGDTLDVTVYMQRFRGDPGTPG
TNGLFGSPGNRGWQGNAGILGPKGPPGPPGPRGPKAVTNVLKGMKGDQGEIGPPGPPGNS
THPHSQPPFGPLGPPGPKGFKGETGDPADDKGETGITGFPGSRGLPGAPGRPGLRGDAGE
QGLIGREGPKGVRGEVGELISLGSWRWSSSAGPSGSAGEEGPQGARGSVGDQGIPGPPGR
PASYTQQQVFDYAGPFGRKGEPGEKGQQGEQGSPAVSAGAPGKPGRPGSRGPPGPKGSWE
DFFKGSPGVRGRPGNAGFKGVKGDHGQCECAVNNSPPGPPGPVGDTGDPGMTGEFGREGD
AGDPGPSGVDGLPGTPGLFGEPGPRGRKGDTAVATQKGYHGDTGTPGQDGELGKPGFPGR
VGLPGFPGSRGLPGDDSLEERGEKGSPGVPGRAGAPGLRGEPGPELEGIKGQPGLPGDAG
LDGYPGVAGTPGSPGGCSPTGDGEQWDVTGPCGTFPGPPGLPGSSGPRGLPGLAGLPGEK
GLPGLFGLQGDTGESGDYGPGGQRGPPGFPGPRGDLGVPGRKGSVGSPGVSGRLGRNGAP
GDEGVHGEILGAQQGPPGDPGLYGLQGGKGFAGDQGEPGYPGTGGMPGMIGSKGNTGPPG
LQGTEGSPGPAGNYGYPGDPGKAGPPGPPGSVGQPGLTGERGTEGNPGAPGPFGIKGLPG
EPGNYGFLGESGSPGNAGQPGLDGKPGLLGMKGYKGSSGQSGFGGVSGNTGVKGVSGIKG
DTGLPGQIGPQGMTGKPGEKGDRGLRGPPGEKPEIPVKLIDKMKGTKGEPGNLGNQGFVG
PRGSKGLPGVPGHEGGHGFPGGPSHEKGIQGDAGARGLPGFKGMPGYTGNKGISGFDGMS
GGKGVKGSPGAYGASGDKGNKGIKGESGPRIDIPGATGLRGEVGSSGDPGERGLPGLAGY
RGLPGFDGIEGKRGQSGDAGDVGYPGSDGQKGTPGNQGQKGFAGTPGKEGYPGFPGFPGA
KGFAGLIGLYGLDGLKGQKGVSGITGLDTSGPSGNPGPKGENGDDGNSNNQAGVPGFAGS
KGSQGDVGDQGQPGPSGIRGPVGPDGKPDIQGPPGDKGFHGPQGFHGLPGARGFPGIDAR
LGEKGIPGTLGYPGVTGRKGFNGDQGPSGYRGPNGISGKKGEKGEQGSMGIPGVIGIKGE
RGPYGPKGDAGPPGFRGLPGNQGPTALPSIVVGERGPPGPQGIQGPRGIQRESGPQGPPG
DAGFIGPIGQKGMPGIGGRPGTPGFRGEEGQVGHAGLQGMEGNPGKPGVPGLPGMPGRSI
SVGYLLVKHSQSELTPMCPVGMSKLWDGYSLLYLEGQEKAHNQDLGLAGSCLPRFSTMPF
LYCNPGDICYYASRNDKSYWLSTTAALPMMPVEEGEIKPYISRCSVCEAPSVAIAVHSQD
ITIPQCPAGWRSLWIGYSFLMHTAAGNEGGGQSLSSPGSCLEDFRTAPFIECNGAKGTCH
YFANKHSFWLTSIDQSFHAEPASETLKADQLLSRISRCQVCMKNL
NT seq
4998 nt
NT seq
+upstream
nt +downstream
nt
atgcgagggcatcgcaacggacacgtgacgcatctcaggttgctgctgctgtgcgcctgc
gtggccgtcctcatcgcgggagcgcgcgcgggtgggaagaagcacagcggtccctgcaga
ggaagagactgcagcggaggatgcaaatgttttcccgagaagggtgccaggggtcaacat
gggcctgtcggtccccaagggatcgcggggcccccggggagaccgggagatccgggcatc
caagggccaaaggggcacaaaggtgacactggacgtagtggcatcactgggccaaaggga
aatacgggaatgacgggtgtccccggcttctctggaaacgatggaattccgggccacccg
ggacaagcgggacccagagggaagcccggggcagacggctgtaacgggacagcgggggaa
tccggtcaaacgggagcacctggttttcctggacaaacgggcaggaagggggagaagggc
gacaccttggatgtgaccgtctacatgcagagattcaggggagacccaggcacaccggga
accaatggactatttggctctcctggtaaccgaggatggcagggaaacgcaggtatcctc
ggaccaaagggtccaccggggcccccgggtcctcgcggaccaaaggccgtgacgaatgta
ctcaaggggatgaaaggcgaccagggggagatcggacccccgggacccccaggaaactcg
actcatccccacagtcagccccctttcggaccgttgggccctcctggaccgaagggcttt
aaaggagaaacaggagatccggctgacgacaaaggagagactggaattacggggttcccc
ggatcacgaggtctacctggagcacctgggaggcctggactacggggggacgcgggcgaa
caaggactcataggaagagagggtccaaagggtgtgagaggagaagtgggggaactgatt
tcattaggatcgtggcgctggtcttcatcagctggtcccagtggttcagccggtgaggag
ggtccccaaggtgcgaggggctcagtaggagatcaaggcattcctggaccaccaggacgg
cccgcttcttacacacagcaacaagtgtttgattacgccgggccatttggaagaaagggg
gaaccaggagagaagggtcaacagggggaacaaggaagtcctgctgtcagtgcaggagca
ccgggcaaacccggccgcccaggttcgagaggtcctccgggccccaaaggatcgtgggaa
gatttcttcaaggggtctcctggagttagaggaaggcctggaaatgcaggtttcaaggga
gtcaaaggtgatcacgggcaatgtgaatgcgccgttaacaactctccaccagggccaccg
gggccagttggtgacaccggagaccctgggatgacgggagagtttggacgcgagggtgac
gctggagacccgggaccctcaggagtggatggattgccgggaactccggggctctttggt
gagccaggtccaagaggcagaaaaggagacacagctgtggccacacagaaaggctatcat
ggcgacactggcactccggggcaagacggtgaactgggaaagccaggatttccgggccga
gttggtctgcctgggtttcctggcagtcgtggtcttccaggcgacgattccttagaagaa
agaggagaaaaaggttctcctggtgtaccgggtcgagctggcgcacctggacttcgaggg
gagccaggtccagagcttgagggtatcaaaggccagcctggtttacccggtgatgctggt
cttgatggttatcccggagtcgcaggaacacccggtagcccaggcggctgtagtccaaca
ggagatggagagcaatgggatgtaacaggtccttgtggcactttcccaggaccccctgga
ctgcctggttcttccggacccagaggattacctgggctcgcaggtcttccgggtgaaaag
ggtctaccaggtctgtttggactacaaggggatacaggagaaagcggagactacggccct
ggtggccaacgtggaccacccggttttcccgggccccgcggtgatttgggcgtgcctggc
agaaaagggtctgttggatctccaggtgtgtctggccggctcggacggaatggagcacct
ggggatgaaggtgtccacggggaaatattgggcgcacagcaaggaccccctggtgatcca
ggactgtatgggcttcaagggggcaagggtttcgctggagatcagggagaaccaggctat
ccaggaacggggggcatgcctggtatgattggttccaaaggcaacactggccctccaggc
ctgcaagggacggaaggaagccctggaccggcaggcaattatgggtaccctggtgatcct
ggcaaagctggtccaccagggccaccgggttctgtcggacaaccaggcttaactggtgaa
aggggaacagaaggtaacccgggagctccaggtccatttggaataaaaggtttaccaggg
gaaccagggaactatgggttccttggggagagcggctcgccaggtaatgcgggacagcct
gggctagatggaaaaccaggacttctgggaatgaaaggatacaaagggtcttctggccag
tcaggctttggcggggtctctggtaatacaggcgttaaaggagtcagtgggataaaagga
gacactggattaccaggccaaattggccctcaaggaatgacaggaaaacctggagaaaaa
ggtgatcgcgggttaaggggcccacctggcgagaagccagagatccctgtaaagctgatc
gacaaaatgaaaggaacaaagggagaacctggaaacctaggaaatcaaggcttcgtcgga
ccaagaggctcaaagggtctccctggtgttccggggcacgagggaggtcatggctttcct
ggtgggcccagtcatgaaaagggtatacaaggagatgcgggggcacggggactaccgggg
ttcaaaggaatgccaggctataccgggaataaaggaatttctggctttgatgggatgagt
ggtggaaagggggtcaaaggaagccctggtgcctatggcgcatcaggggacaagggcaac
aagggtatcaaaggtgagagtggccctcgcatagacattccaggagcaactggactgaga
ggagaggttggttcttcaggagacccaggtgaaagaggattacctggactggctggatat
aggggactccctggatttgatggtatcgaagggaaaaggggacagtcaggtgatgcaggt
gatgtaggatatccaggttctgatggacagaaaggaactcctggcaaccaaggtcagaag
ggttttgctgggacacctggaaaagaggggtacccaggtttcccagggtttccaggagcc
aaaggctttgctggtctgattggtctttatggattagacggtctgaaaggacaaaagggt
gtctctggaatcacaggtttggatactagtggaccatctggcaacccaggacccaaagga
gagaacggtgacgatggcaactccaacaaccaggcgggagtgccgggctttgcaggttca
aaaggctcgcaaggagatgttggtgaccaaggtcaacctggaccatcaggaatccgtggc
ccggtaggaccagatggaaaaccagacatacaaggaccccctggggataagggctttcat
ggacctcaaggattccatggtttacctggagccagggggtttcctggtattgacgcccgc
cttggagaaaagggtatacccggaacacttgggtatcctggagttactggtaggaaaggg
ttcaacggagaccaaggtccaagtggatataggggaccaaatgggatttctgggaagaaa
ggtgagaaaggggagcaaggctcaatgggaattcctggtgtgattggaatcaagggagaa
agaggaccatatggcccgaaaggagatgctggacctccaggtttccgtgggttgccggga
aaccagggtccaacggcactgcccagcatagtcgtaggagagaggggccctccgggacca
cagggtattcagggaccgagaggcatccaaagagaatcaggaccacagggacctcctggg
gatgctggatttattgggcccattgggcagaagggcatgcccggaatcggcggaagaccg
ggaacgcctggattccgtggagaggaaggtcaagtgggccatgctggtctgcaaggcatg
gaaggtaacccgggtaaaccaggtgtccccggcttacctggcatgcccggccgcagtatc
agtgtgggttacttgttggtcaagcacagtcagtctgagctgactcccatgtgtcctgtg
gggatgtcaaaattatgggatggatacagtcttttgtatctggaaggccaagaaaaggct
cacaaccaggatcttggcttggctggctcctgccttccacgcttcagcaccatgcccttc
ctgtactgcaaccctggagacatctgctactacgccagcaggaatgacaagtcctactgg
ctgtccaccactgccgccctgcccatgatgcccgtggaggagggcgagatcaaaccctac
atcagtcgctgctcggtgtgtgaagccccgtcggtcgccatcgctgtgcacagccaggac
atcaccatcccgcagtgtcccgctggatggcgcagcctgtggattggctactccttcctc
atgcacacggcagcgggaaacgaaggcgggggtcagtcgctttcgtcgcccggatcctgc
ttggaggacttccggacggcgccgttcatcgagtgcaatggcgccaaaggcacgtgccac
tacttcgccaacaagcacagcttctggctcacctccatagatcagtctttccacgccgag
ccggcatcagagacgctcaaagcggaccagctcctgtcgcgcatcagccgctgccaggtc
tgcatgaagaacttgtaa
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integrated database retrieval system
