Phycodurus eques (leafy seadragon): 133411316
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Entry
133411316 CDS
T09682
Symbol
rc3h1b
Name
(RefSeq) roquin-1 isoform X1
KO
K15690
RING finger and CCCH-type zinc finger domain-containing protein
Organism
pee
Phycodurus eques (leafy seadragon)
Brite
KEGG Orthology (KO) [BR:
pee00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
pee03000
]
133411316 (rc3h1b)
04121 Ubiquitin system [BR:
pee04121
]
133411316 (rc3h1b)
Transcription factors [BR:
pee03000
]
Eukaryotic type
Zinc finger
Cys3His zinc factors
133411316 (rc3h1b)
Ubiquitin system [BR:
pee04121
]
Ubiquitin ligases (E3)
Single Ring-finger type E3
Other single Ring-finger type E3
133411316 (rc3h1b)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Roquin_1_2-like_ROQ
ROQ_II
zf-RING_5
zf-RING_UBOX
zf-RING_2
zf-C3HC4_4
zf-C3HC4_3
zf-C3HC4
Prok-RING_4
zf-CCCH
zf-C3HC4_2
zf-CCCH_4
zf_CCCH_4
FYVE
zf-CCCH_UNK
NS3_helicase_C
Baculo_IE-1
RING_XB3-XBAT31
zf-RING_6
Motif
Other DBs
NCBI-GeneID:
133411316
NCBI-ProteinID:
XP_061549523
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Position
13:complement(16171824..16192215)
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AA seq
1118 aa
AA seq
DB search
MPVQAPQWTEFLLCPICTQTFEETVRRPISLGCGHTVCKMCLNKLHRKACPFDQTAISTD
IEQLPVNTALLQLVGGQVPKAQPVGLISSPEDSQHYEEARQCVEELALYLKPLSNMRGVG
LSSTAQSMLSRPMQRKLVTLVHCQLVEEEGRIRAMRAARSLGERTVTELILQHQNPQQLS
SNLWAAVRARGCQFLGPAMQEEALKLVLLALEDGSALSRKVLVLFVVQRLEPRFPQASKT
SIGHVVQLLYRASCFKVTKRDEDSSLMQLKEEFRTYEALRREHDSQIVQIAMEGGLRIAP
DQWSSLLYGDQSHKSHMQSIIDKLQTPASFAQSVQELTIALQRTGDPANLNRLRPHLELL
ANIDPSPDAPPPTWEQLEKGLVAVKTVVHGLVDFIQNHSKKGADPQQPPQHSKYKTYMCR
DMKLKGGCPRGASCTFAHSQEELEKYRKMNKRLAARLPGSGGPEEGLPLDVGVTRKPSPL
TNGSVVPSLPQLIARGADTVPYELLRKPLKMDGGSPSAPGSPPDLLDPMTKTGMPMPPHA
MAHPRMAPDHLSGVKQMPVVARGSPVYPQQQLPEMFYSDTRPPPSASQYEPSQYPPGYPY
QQPPQYVSRDYIRNPLPPSESGPPYDPYPGYGPPERPYQAPHSGPHFSYPHPSHYDRGRH
VTYSGPPPPPQPYPSQRDGLVRISAAPLDVPPQSAGQANSLYHTEPSVRDRYPPEGYYPP
GAPSQPMRTYVRGASYAGSQPSLDYLHRRRKELLSQLEERKVISPPPFAASPTLSHPFPS
DYPPEYGDESSKSIGKCREPDYAGQYSPWSCDTISSYIGTKDAKPRDVMVPGAMDMMNVD
AKVLREPCLEAPRRGAEVKDDDPIIPFGPQPTVSRFGAISRTSKTGYQTGPVQAMVPAPQ
NPNSKHMTMAAEYTYGSHAGWGGTSYPSHQTAQDREQLKKELQQVNQQINQQTQMQSMES
ASNPLLLQREASALAGPPVTSSQGQALAAQSQQPPKWPTGGASAAAVSSEQLSLELHQVE
REIGKRTREMAMENQVAHEVQQYKLKSAENGQPEHKTQLEEISLALGEVSNGSSSLQEGA
VGGSMLSLTNKTSTLSLCSDPVGTGSEMQKNGVVHSCS
NT seq
3357 nt
NT seq
+upstream
nt +downstream
nt
atgccagttcaagcgccacagtggacagagttcctgctctgtccgatctgcacacagaca
tttgaggagaccgttcggcggcccatcagtttgggctgcggacacactgtctgcaagatg
tgcctgaacaagctccaccgcaaggcctgtccctttgaccagacggccatcagcacggac
atcgagcaactgcctgtcaacacagccctgctgcaactggtgggaggccaggttcctaag
gctcagccagttggcttgattagcagtcctgaggactctcagcattatgaggaagcgagg
cagtgtgtggaggagctggccctctacctgaaacccctcagcaacatgcgaggggtcggt
ctgagcagcacggcccaaagcatgctgagtcgacccatgcagaggaaactggtcactctg
gtccactgccagctagtagaggaggagggccgcatccgggccatgagggccgcccgctct
ttgggcgagcggacagtcacggaactcatcttgcagcaccagaacccccaacagttgtcc
tccaacctgtgggctgcagtccgtgcacgtgggtgtcagtttcttggcccagcgatgcaa
gaagaggccctgaaactggtcctcctcgcactggaggatggctcagctctgtccaggaag
gtgttggttctctttgttgtccagaggcttgaacctcgatttccacaggcctccaagaca
agcataggccatgtggtgcagctcctctatagggcctcctgcttcaaggtgaccaaacgt
gatgaagattcatccctcatgcaactcaaggaggagttccgtacttatgaggcactgcgg
cgcgagcatgactctcagattgttcaaattgctatggagggcggcttgcgcatcgcaccc
gaccagtggtcttcgctgttatatggggatcagtcgcacaagtcacacatgcagtccatc
attgataagctgcagaccccagcatcctttgcccagagcgtccaagagctcacaattgcc
ctgcagaggacgggagacccagccaacctcaacaggctgcggcctcaccttgaactgctt
gccaacatcgatcccagccctgatgctccccctcccacatgggagcagctcgagaagggc
ttggtggccgtgaagacggtcgtgcatggcctagtggacttcatccagaaccacagcaag
aaaggagctgaccctcaacagcctcctcagcacagcaagtataagacgtacatgtgtcgc
gacatgaaactgaagggaggctgtcctcgtggagcgagctgcacctttgctcactctcag
gaagaactggaaaagtatcgaaagatgaataaacgcctggcagctcgcctccctggttca
ggagggccagaagagggcctccccctcgatgtgggcgtgaccaggaagccttcacccctc
accaacgggagcgtcgtaccctccctgccccagctcatcgcacgtggcgcagacacagtc
ccgtacgaactgctgcggaagcctctcaagatggacggagggagcccaagtgccccggga
tcaccacctgatctcttggaccctatgaccaagactggtatgcctatgccacctcatgcc
atggctcacccacggatggctccagaccacctttccggagtgaagcaaatgcctgtcgtc
gcccgaggttcgcctgtctacccccagcagcagctccctgagatgttctattctgacacg
cgccccccaccctctgcttcccagtatgagccctcacagtacccaccagggtacccctac
cagcagccaccgcaatacgtttctcgggattacatccgtaaccctctacccccgagtgag
tcaggacccccttatgacccgtaccctggttacggcccaccagagcgcccctaccaggcc
ccccactccggtccccacttttcgtaccctcacccatcacactacgaccgcggacgccac
gtgacctacagcggcccgccgcctcccccgcagccttatccatctcagagagatggtctc
gtcaggataagcgctgcgccgttggatgttcccccacaatcagctggacaggctaactcc
ctctaccacacagagcccagtgtacgagatagatacccaccagaaggttactacccacca
ggagccccatcacaacccatgaggacttatgtcaggggggcatcatacgccgggtcccag
cccagtctggactatctacaccgccgtcgcaaggagctcctctcccagctggaggaaagg
aaagtcatctcccctccaccatttgcagcctctcccacactatcgcatccattccccagt
gactaccctcccgagtatggcgacgagagctccaagagcattgggaaatgcagagagccg
gactacgctggccagtactccccatggtcgtgtgatacaattagctcctacattggcacc
aaggatgccaaacccagagatgttatggttcctggtgccatggacatgatgaatgtggat
gcaaaggttctaagggaaccatgcctggaggcccctcggaggggtgcggaagttaaggac
gacgaccccattattccatttggtccccagccaacagtgtcacgctttggcgccatctcc
cgcacctccaagacgggctaccagaccggccctgtccaagctatggtccccgccccccag
aacccaaactctaaacacatgaccatggctgcagaatacacgtatggaagtcatgcagga
tggggcggaacttcatacccctcccatcagacagcccaggacagagaacagctgaagaag
gagctgcagcaggtcaaccagcagattaaccagcagacgcagatgcaaagcatggagtct
gccagtaaccctttactgctgcagagagaagccagtgccttggctggcccgccggtcacc
agcagccaaggtcaggccttagccgctcagtcgcagcagccccccaagtggccaaccggg
ggggcgagtgctgcggccgtctccagtgaacagctaagcctggagctccaccaggtggag
cgagagattggaaaacgcactcgagaaatggctatggagaaccaagtagcccatgaggtc
cagcagtacaagctgaaatccgctgagaatggacaacctgagcacaagacccagctggaa
gaaatctcgctcgctctcggtgaggtgtcaaatggctccagtagtctgcaagaaggtgca
gtgggcgggtccatgctgtcgctgacaaacaagacgtctacgttaagcctgtgttctgac
ccggtcggcaccggctcagaaatgcagaagaatggtgttgtccattcctgctcttaa
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