| Entry |
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| Symbol |
smg7
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| Name |
(RefSeq) nonsense-mediated mRNA decay factor SMG7 isoform X1
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| KO |
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| Organism |
pee Phycodurus eques (leafy seadragon)
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| Pathway |
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| Brite |
KEGG Orthology (KO) [BR:pee00001]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
133411462 (smg7)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:pee03019]
133411462 (smg7)
Messenger RNA biogenesis [BR:pee03019]
Eukaryotic type
mRNA surveillance and transport factors
Surveillance factors
Other surveillance factors
133411462 (smg7)
mRNA cycle factors
Common to processing body (P body) and stress granule
133411462 (smg7)
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| SSDB |
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| Motif |
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| Other DBs |
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| LinkDB |
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| Position |
13:26208843..26241617
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| AA seq |
1139 aa
MSLCAQLLRQAEALKADMTDSKLAAAEAWTSRQALQDLYQKMLVTDLEYALDKKVEQDLW
NHAFKNQITTLQSQAKNRANPNRSEVQANLSLFLEAASGFYTQLLQELCSVFNVDLPCRV
KSSRLGIISNRQNGGGGGGIVTPQPSSCSYICQHCLVHLGDIARYRNQTSQAESYYRHAA
QLVPSNGQPYNQLAILASSKGDHLTTIFYYCRSIAVKFPFPAASTNLQKALSKALESREE
ARGKWSVSDFIKAFIKFHGHVYLSKSPEELDSLRERLEEQFQRLMLQKAFSSQQLVHITV
INLFELHHLRETAADGQQTVSWFQLLSLFMSFLGLMCSRVLLNKNREEAEVAGECPLPAI
KVSLDWLRLKPGVFREAAVDQRQHVWPWLVSILNSFQPKDQHVSTYSATPLPEEFELQGF
LALRPALRSVDFTKGHQGVPVDRDVLLLRTRHQRLVALGKWITDNQPGLIQCRAGEDGLL
LFISDIPEQAIDEPAEKDPCVLQEASNGEQALSEGGNAGLKSVLSAGKAPSSWSNGAERP
VVTFKENIKPREQSREPASRGPQQKDAGKERRDLAKGNGTAGKSELKRDGKRKCENKKGA
QEKVPDAGKLVKGQTELRKTPVSEAKKTPATQSQAATCSSQFIPIHHPGAFPPLPSRPGF
PPSAFVIPPPVAFPGLQVNPGFAFSTSVSVPGPFLPHAQAGSQVAGGGKQSHIPYSQQRP
SGPGSSGPGQQQPPSQLQVTSPAKPVQQVGMAKSPPHLQQAFLQDPQLWSPSQAVLQKLP
ASVHIQSLKPQAFYLAPPDAIKVFEQQMAPPHASTVDKKMKFPPYWDPSSFRPTDDRMKR
PPPPEQDPTGPRGPTFDDSKSSPLLPPDLFKSLAHLEEEDELLFSKPPDFFQALSAPLSS
LPGPNMFLPNHSRQTDCGPEVLGQSSSLLPVTGLPVQEYNQNSIFSQAYGKKVASGSKCD
APMMHQETSLYSLFEWTPWSPSLPASSDHSTPASQSPHSSNPSSLPSSPPTHTHNHAVAT
APFSNFGPIGTPDSRERRTLDRWKSDKTGAGGVSGFGLDYLPAATGGSDAGWHQAPPGGS
SWTNQESPMEESSSSVLLDSFKSIWSSSMMQPGPSALEQLLLQQKQKQQRGHGAMNPPH |
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| NT seq |
3420 nt +upstreamnt +downstreamnt
atgagcctctgcgcgcagcttttacgacaggcagaggccctgaaggcggacatgacagac
tctaagctggcggcggccgaggcgtggacgtcccgccaggctctgcaggacttgtaccag
aagatgctggtcacggacctggagtacgctctggacaagaaggtggagcaggacctgtgg
aaccacgccttcaagaaccagatcaccaccttgcagagccaggcgaagaaccgggccaac
cccaaccgcagcgaagtgcaggccaacctgtccttgttcctggaggcggccagcggcttc
tacactcagctgttacaggagctgtgcagcgtcttcaacgttgacctgccgtgccgcgtc
aagtcttcgcggctgggcatcatcagcaacaggcagaacggcggcggcggcggcggcatc
gtgacaccgcagcccagctcgtgctcgtacatctgccagcactgcctggtgcacctgggc
gacattgcgcgctaccgcaaccagaccagccaggccgagtcttactaccgacacgccgcc
cagctggtcccgtccaacggtcagccgtacaaccagctggccatcctagcgtcctccaaa
ggagaccatctaactaccatcttctactactgccgcagcatcgccgtcaagttccccttc
cccgccgcctccaccaacctgcagaaggcgctgtccaaggcgctggagagccgcgaggag
gcgagaggcaagtggagcgtgtccgacttcatcaaggccttcatcaagttccacgggcac
gtgtacctgagcaagagtccggaggaactggactctctgagggaacgtctggaggagcaa
ttccagaggctgatgctgcagaaggccttcagctcgcagcagctggtgcacatcacagtc
atcaacctgtttgagcttcatcacctcagagagacggcagccgacggtcagcagacggtc
agctggttccagctactcagtcttttcatgtccttcctgggcctcatgtgcagccgggtt
ctgctcaacaagaaccgggaggaggcggaggtggcgggagagtgtcccctgccggccatc
aaagtttctctggactggctccgcctgaagcccggtgtgttccgcgaggccgccgtggac
cagaggcagcacgtctggccctggctggtttccatcctcaacagcttccagcccaaagac
cagcacgtgtccacatactcagcgacgccgctgccggaggagttcgagcttcaaggcttc
ctggctctccgtccggcactcaggtcagtggacttcaccaaaggccaccagggcgttccg
gtggaccgcgacgtgcttctgctgcgcacgcgtcaccagagactggtggcgctgggaaag
tggatcactgacaaccagccggggctcatccaatgtcgtgccggcgaggacggcctgctc
cttttcatcagcgacattcctgagcaggccatcgacgagccggcggagaaggatccgtgc
gtgctgcaggaggcgtccaacggcgagcaggcgctcagcgagggcggcaacgccggcctc
aagtcggtgctttcggcgggcaaagctcccagttcgtggtcgaacggcgccgagcggccc
gtcgtcaccttcaaggaaaacatcaaaccgcgcgagcagagccgggagcccgccagccgc
gggcctcagcagaaggacgccggaaaggagcggcgggacttggccaaaggaaacgggacg
gcggggaaaagcgagctgaagagagacggcaagaggaagtgcgagaacaagaaaggtgct
caggagaaagttcccgatgctgggaagctggtgaaaggtcagacggaactgaggaagact
ccggtgtcggaagccaagaagactcctgctactcaaagtcaagcagccacgtgctcttcc
cagtttatcccgatccatcatccaggagcctttccgcctctgcctagtcgccctggcttc
cctccgtccgccttcgtcatccctcccccggtggcgttcccgggcctgcaggtgaatccg
ggcttcgccttctccacgagcgtgtcggtgccgggccccttccttccgcacgcgcaggcg
ggctcgcaggtggccggcggcgggaagcagtcccacatcccgtacagtcagcagaggccg
tcggggcccggctcctcgggaccgggccagcagcagcccccctcccagcttcaggtgacg
tcgcccgccaagcccgtccagcaggtcgggatggccaagagtccgccccacctgcagcag
gccttcctgcaggatccgcaattgtggagtcccagtcaggcggtgctgcagaagcttccg
gcgtctgttcacatccagtccctgaagccgcaagccttctacttggcgcctccggacgcc
atcaaagtgttcgaacagcagatggcgccgccgcacgcctccaccgtggacaaaaagatg
aagttcccgccctactgggacccctcctccttcaggcccacagacgacaggatgaagagg
cccccgcctcccgagcaggaccccaccgggcccaggggacccacttttgacgacagcaaa
agctcgcctctcctccctcccgacctcttcaaatctctggcccatctggaggaagaggac
gagctgctcttttctaagcctcccgatttcttccaggctctgtccgctcctcttagctcg
cttcctggaccaaatatgtttctgcccaatcacagcagacagacggactgtggccctgag
gtgctcggccagtcgtcttcactcttgcctgtgactggcctgcccgtgcaggagtacaac
cagaacagcatcttcagtcaggcgtacgggaaaaaggtggcgtccggctcgaagtgcgac
gctcccatgatgcaccaggagacgtcgctgtactctctgttcgagtggacgccgtggtcc
ccctcgctgcccgcaagctcagatcactccaccccagccagccaatcccctcactcgtcc
aaccccagcagcttgccgtcctccccgcccacccacacccacaaccacgccgtcgccact
gcgcccttctccaacttcgggcccatcggcacgccagacagtcgcgagcgcagaacgctc
gaccgctggaagtccgacaagacaggtgcaggtggtgtgagcggcttcgggttggactac
ctgccggccgccaccggcggttcggatgctggctggcatcaagccccgcccggcggaagc
tcttggaccaatcaggagtcccctatggaagagtcgtcctccagcgtgctgctggacagc
ttcaagtcgatctggtccagctccatgatgcagcccggcccgtcggcactggagcagctt
ctgctgcagcagaagcagaaacaacagcgaggacacggagccatgaacccgccgcactga |
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