Phycodurus eques (leafy seadragon): 133412055
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Entry
133412055 CDS
T09682
Symbol
lig1
Name
(RefSeq) DNA ligase 1 isoform X1
KO
K10747
DNA ligase 1 [EC:
6.5.1.1
6.5.1.6
6.5.1.7
]
Organism
pee
Phycodurus eques (leafy seadragon)
Pathway
pee03030
DNA replication
pee03410
Base excision repair
pee03420
Nucleotide excision repair
pee03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
pee00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
133412055 (lig1)
03410 Base excision repair
133412055 (lig1)
03420 Nucleotide excision repair
133412055 (lig1)
03430 Mismatch repair
133412055 (lig1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
pee03032
]
133412055 (lig1)
03400 DNA repair and recombination proteins [BR:
pee03400
]
133412055 (lig1)
Enzymes [BR:
pee01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
133412055 (lig1)
6.5.1.6 DNA ligase (ATP or NAD+)
133412055 (lig1)
6.5.1.7 DNA ligase (ATP, ADP or GTP)
133412055 (lig1)
DNA replication proteins [BR:
pee03032
]
Eukaryotic type
DNA Replication Elongation Factors
Other elongation factors
133412055 (lig1)
Prokaryotic type
Elongation factors (archaeal)
Other elongation factors
133412055 (lig1)
DNA repair and recombination proteins [BR:
pee03400
]
Eukaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
Long Patch-BER factors
133412055 (lig1)
NER (nucleotide excision repair)
Other NER factors
133412055 (lig1)
MMR (mismatch excision repair)
Other MMR factors
133412055 (lig1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_A_M
DNA_ligase_A_N
DNA_ligase_A_C
Motif
Other DBs
NCBI-GeneID:
133412055
NCBI-ProteinID:
XP_061551059
LinkDB
All DBs
Position
13:complement(9054150..9114795)
Genome browser
AA seq
952 aa
AA seq
DB search
MQRSIASFFQPKSKDKDVQKKASDKQVKKPVKSPLKAQNGVQEEDSPVKKVPKRSRRILD
SDDDDQEVNAAKQQVKDDLFKAVPTLMSPPPRPPAPATPATTASPASSSSVSSSEGISKR
KTEYDAASRDPRDQGEVNIAQITRKMLPKRKLKEGLSGSDSQQEDEATNTQTVAVAKGQR
SKRARVDDVGDDNNTDEVAMQERDEEAEATEQVRMPDKDGEKAEEAGKKLEDDEAEEEEK
RDAKEPKEEAKKAPISSFFAPRKAAVKTKKNGDGEEKKTTTSSPVEESKDAKTESASTET
DYNPSRPNYHPLEQACWEAGQKVPYLAVARTFEKIEEDSGRLRNIETLANLFRSVLLLSP
DDLLCCVYLCLNQLGPAYLGLELGIGETVLMKAVAQATGRQLDKIKAEAQERGDLGLVAE
SSRSNQRTMFRPASLTVDGVFKKLKEIAGMSGNSAMNKKIGIIKGLFVACRFSEARYIVR
SLAGKLRIGLAEQSVLSALSQAVCLTTPKKGTSPAVIDAGKVMTTESRRAWIEEKSLILK
QTYCEMPNYDILIPVLLKEGIDQLPNHCKLTPGVPLRPMLAHPTKGVGEVMKRFDEAAFT
CEYKYDGERAQIHILESGEVRIFSRNQEDNTSKYPDIISRIPKVKKDSVVSCVLDTEAVA
WDREKKQIQPFQVLTTRKRKDVDASDIKVQVCVYAFDLLYLNGESLVRQPLCRRRALLRE
SFAEVEGEFLFARYIDSDNTDTIAEFLEQSVRDSCEGLMVKTLEKDATYEIAKRSHNWLK
LKKDYLEGVGDTVDLCVIGAYLGKGKRTGTYGGFLLACYDEDNEEFQSVCKIGTGFKDED
LEQHHKFLKEHILPNPRPYYHVDQSAEPDVWLDAVQVWEVKCADLSLSPVYKAAMGMVDP
EKGISLRFPRFLRIRDDKKPEDATSGAQIADLYKKQQQIQNQGDKADMEDYY
NT seq
2859 nt
NT seq
+upstream
nt +downstream
nt
atgcagcgcagcatcgcatccttctttcagcccaagtccaaggacaaggatgttcagaag
aaagccagtgacaagcaagtgaaaaagcctgtgaaaagcccactcaaggcccaaaatgga
gtccaggaggaggactcgcccgtcaagaaggttcccaaacgtagccggcggattttggac
agcgatgacgacgaccaggaagtgaatgccgccaaacaacaagtcaaagatgatttgttc
aaggcggtgcccaccctgatgtctcctccgccgcgtcccccggcccccgccacgcctgcc
actaccgcctcgcccgcctcctccagctctgtctcgtcttctgagggcatcagcaaacgc
aagacagagtatgacgcagcgtcacgggacccgagagaccaaggtgaagttaacatcgcg
caaatcacgaggaagatgcttcccaagaggaagctgaaggagggcctcagcggcagcgac
agtcaacaagaggacgaggccaccaacacgcagacggtggcggtggccaagggccaacgg
agcaagcgagcccgcgtggacgacgttggcgatgacaacaacacggacgaggtcgcaatg
caagaaagagacgaggaggcggaagcgacggagcaggtgaggatgccggacaaagacgga
gagaaagcggaggaggcgggaaaaaagctcgaagatgatgaagcggaagaagaggagaag
agggacgcaaaggagccaaaagaggaagccaagaaagctccaatcagcagcttctttgct
ccgagaaaggctgcagtgaagaccaagaagaacggtgacggagaggagaagaagacaaca
acttcctcacctgtggaggagagcaaagatgcaaaaactgagtcagcgtcgaccgagacg
gactacaacccgtccaggcccaactaccacccgctggagcaagcctgctgggaggcagga
caaaaagtgccttacctggcggtggctcgcacctttgagaagattgaagaggactctggc
agactgaggaacattgaaactctggccaacctgttccgctccgtgctgctgctttctcca
gacgacttgctgtgctgtgtgtacttgtgtttaaaccagctgggacccgcctatcttggc
ctggagcttggcatcggggagacggtgctgatgaaagctgttgcgcaagccacgggacga
cagctggacaagatcaaggcggaggctcaagagcgcggggacctcggtctggtggccgag
agctcccgaagtaaccagcgcaccatgttcaggccggccagcctgacggtcgatggcgtc
ttcaagaagctcaaggagatcgcgggcatgagcggcaactcggccatgaataagaagatc
ggcatcatcaaaggactctttgtggcctgccgtttctcggaggcccgctacatcgtgagg
tcgctagcggggaagctgaggatcggactggcagagcagagcgtcctgtcggcgttgagt
caagctgtgtgcctcacgacgcccaaaaagggcacctcccccgccgtgatagatgccggg
aaagtgatgaccaccgagagccgacgtgcttggattgaagagaagagcctcattcttaag
cagacttactgcgagatgcccaactatgacatcctcatccccgtccttctcaaagaaggc
attgaccagctgcccaatcactgcaagctcaccccaggcgtacccctgaggcccatgctg
gcgcaccccactaagggtgttggggaggtgatgaaacgcttcgacgaggcagcattcacc
tgcgagtacaaatacgacggcgagcgtgcgcagattcacatcctggagagcggcgaggtt
cggatattcagtcgcaaccaagaggacaacaccagcaagtaccccgacatcatctctcgt
atccccaaggtgaagaaagactctgtggtctcatgcgtgctggacacggaggcggtagca
tgggaccgcgagaagaaacagattcaacccttccaggtcctcaccactcgtaagaggaag
gacgtggatgcatcagacatcaaagtccaagtatgcgtgtacgcctttgatctcctctac
ctcaatggagagtctctggtgcgacagccgctttgtcgacgtcgggcgctactgcgagag
tccttcgccgaagtggagggggagtttttattcgcccgatatatcgactcagacaacacg
gacaccattgcagaattcttggagcagtctgtccgagactcatgcgaaggcctaatggtg
aagactctggagaaggatgccacctatgaaatcgccaagcgctcccataactggctcaag
ttaaagaaggattacctggagggggttggtgacacggtggacctgtgcgttatcggcgcc
tacctgggtaaaggcaagaggacggggacgtacggcggcttcctgctggcctgctacgac
gaagacaatgaagagttccagtcggtctgcaagattgggactggcttcaaggatgaagat
ctggagcagcaccacaaattcttgaaggaacacatcctgcccaatccccgcccctactac
cacgtggaccaatcggccgagcccgacgtgtggctggatgccgtgcaggtttgggaggtg
aagtgtgccgacctgtcactgtcgcccgtgtacaaggccgctatgggaatggtggatcca
gagaagggaatctccctgcgttttcctcgcttccttcgcatccgagatgacaagaagccc
gaagacgccaccagcggagctcagattgccgacctgtacaagaagcagcagcagatccag
aatcagggagacaaagccgacatggaggactactattga
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