Phycodurus eques (leafy seadragon): 133412134
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Entry
133412134 CDS
T09682
Name
(RefSeq) regulator of nonsense transcripts 1 isoform X1
KO
K14326
regulator of nonsense transcripts 1 [EC:
5.6.2.5
5.6.2.3
]
Organism
pee
Phycodurus eques (leafy seadragon)
Pathway
pee03013
Nucleocytoplasmic transport
pee03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
pee00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
133412134
03015 mRNA surveillance pathway
133412134
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pee03019
]
133412134
Enzymes [BR:
pee01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.3 DNA 5'-3' helicase
133412134
5.6.2.5 RNA 5'-3' helicase
133412134
Messenger RNA biogenesis [BR:
pee03019
]
Eukaryotic type
mRNA surveillance and transport factors
Surveillance factors
Surveillance complex
133412134
mRNA cycle factors
Common to processing body (P body) and stress granule
133412134
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UPF1_Zn_bind
AAA_12
AAA_11
UPF1_1B_dom
AAA_30
AAA_19
ResIII
SLFN-g3_helicase
ATPase
NPHP3_N
nSTAND3
Helicase_RecD
DEAD
AAA_16
SRP54
UvrD-helicase
UvrD_C_2
AAA_22
Motif
Other DBs
NCBI-GeneID:
133412134
NCBI-ProteinID:
XP_061551223
LinkDB
All DBs
Position
13:12362652..12388451
Genome browser
AA seq
1103 aa
AA seq
DB search
MSVEAYGPSSQTLTFLDAEEAELVGADTQGSEYDFTDFTLPSQTQGQTQSQLDNQVNSPG
GVLQNGDDPVLNASHLLAELNFEEDEEDTYYSKDLPVHACSYCGIHDPACVVYCNTSKKW
FCNGRGNTSGSHIVNHLVRAKSKEVTLHKDGPLGETVLECYNCGCRNVFLLGFIPAKADS
VVVLLCRQPCASQSSLKDINWDSSQWQPLIQDRCFLSWLVKIPSEQEQLRARQITAQQIN
KLEELWKENPSASLEDLEKPGVDEEPQHVLLRYEDAYQYQNIFGPLVKSEADYDKKLKES
QTQDNITVRWDLGLNKKRIAYFTLPKTDSDMRLMQGDELCLRYKGDLAPLWKGIGHVIKV
PDNYGDEIAIELRSSAGAPVEIPHNFQVDFVWKSTSFDRMQSSLKTFAVDETSVSGYIYH
KLLGHEVEDVVIKCQLPKRFTAQGLPDLNHSQVYAVKTVLQRPLSLIQGPPGTGKTVTSA
TIVYHLARQGNGPVLVCAPSNIAVDQLTEKIHQTGLKVVRLCAKSREAIDSPVSFLALHN
QTRNMDSMPELQKLQQLKDETGELSSSDEKRYRALRRTAERELLMNADVICCTCVGAGDP
RLAKMQFRSILIDESTQATEPECMVPVVLGAKQLILVGDHCQLGPVVMCKKAAKAGLSQS
LFERLVVLGIRPIRLQVQYRMHPALSAFPSNIFYEGSLQNGVTAGDRVKNGFDFQWPQPD
KPMFFYVTQGQEEIASSGTSYLNRTEAANVEKITTRLLKAGAKPDQIGVITPYEGQRSYL
VQYMQFSGSLHTKLYQEVEIASVDAFQGREKDFIILSCVRANEHQGIGFLNDPRRLNVAL
TRARYGVIIVGNPKALSKQPLWNHLLNYYKEQKVLVEGPLNNLRESLMQFSKPCKLVNTI
NPGGRFMSTAMYDAREALIPGSVYDRSSNGRTSNMYFQTHDQIGMIGTGPNPLTSLNIPI
PFSLVMPPIPPPGYMGHVDGPKSGRGGGMKGKAGSGGGGGARGNRPRNRSNMGNQSGGHP
GGSQASQDLVSQTFSQGPLTQGYNNMSQPSQMSQPGLSQPELSQDSYLGDEFKSQIDVAL
SQDSTYQGERAYQHGGVTGLSQY
NT seq
3312 nt
NT seq
+upstream
nt +downstream
nt
atgagcgtggaggcgtacgggccgagctcccagacgctcacgtttctggacgctgaggaa
gccgagctagtcggagcagacacccagggctccgagtacgacttcaccgattttaccctg
ccaagccagactcaaggacagacccagagtcagctagacaaccaggtcaacagtcctgga
ggtgtgttacaaaatggagacgaccctgtgctgaatgcaagtcacttgctggcagagttg
aactttgaggaggatgaggaggatacatactattccaaggatctccctgtgcatgcttgc
agttactgtggaattcacgatccagcctgcgtggtctactgcaacaccagcaagaagtgg
ttctgcaatggccgtggaaacacctcgggcagtcacattgtgaaccatctggtgagggca
aagtccaaggaggtgacccttcataaagacggtcctctgggagaaacggtgctggagtgc
tacaactgcggttgtcgcaatgtctttctgcttggcttcatccctgcaaaggcggactca
gtagtggtgttactgtgcagacagccatgtgccagtcagagcagcctcaaggacatcaac
tgggacagctcccaatggcagcctctcattcaggaccgctgcttcctctcctggctggtc
aaaatcccctcagagcaggagcagcttagggcccgacagatcacagcccagcagatcaac
aaattggaggaactgtggaaggaaaatcccagcgcatccttggaagacctggagaagccc
ggggtggatgaggagccccaacatgttttgctgcgctatgaggatgcctaccaataccag
aacatctttggtcctcttgtcaagtcagaggctgattatgataagaagctaaaagagtcc
cagactcaagacaatatcacagtcagatgggaccttggcctcaataaaaagagaattgcc
tattttactctgcctaagactgactcagatatgcgactgatgcaaggagatgagctctgc
ctgaggtacaaaggggatctggcacctctatggaaaggcattggacatgtcatcaaagtc
cctgacaactacggtgacgagatcgccatcgagctgaggagcagcgctggagctcctgtg
gagatcccacacaactttcaggtggactttgtgtggaagtccacatcctttgacaggatg
cagagttccctgaaaacatttgctgtggatgagacgtcagtgtctggttacatctaccac
aaactgctgggccacgaggtggaggacgtggtcatcaagtgtcaactgcccaaacgcttc
actgctcaaggactgcctgacctaaatcactcccaagtgtatgcagtaaagacagtgctg
cagcggccgctcagcctgattcaaggtccgcctggtactggaaagacagtgacttctgcc
acaattgtgtaccacctggcccgacagggaaacggaccagtgttggtgtgtgcgcccagt
aacattgctgtggaccagctgacagaaaagatccaccagaccggactcaaagtggttagg
ctgtgtgccaagagcagggaagccattgactcacctgtgtccttcctggctctgcacaac
cagacccgtaacatggacagtatgccagaacttcagaaactacaacagctaaaagatgag
actggagagttgtcctcctctgatgagaaacgttacagagctctgcgacgcaccgctgag
agggaactgttgatgaacgctgatgtaatctgctgcacgtgcgtcggggcaggtgaccct
cgcctagccaagatgcagttcagatcaatcctgattgacgagagcacacaggccactgag
ccggagtgcatggtgcctgtggtgcttggagccaaacagttgattctggtgggcgaccac
tgccagctgggcccagtggtgatgtgcaagaaggcagctaaagcaggcttgtcccagtct
ctctttgagcgtctggtggttctggggatccgtccgatccgtctgcaggttcagtaccgc
atgcacccggccctcagtgccttcccctccaacatcttctatgaaggctcgctgcaaaat
ggagtcactgcaggtgaccgtgtgaagaacggctttgacttccagtggccgcagcctgac
aagcccatgttcttttatgtcactcaaggccaggaggaaatcgcaagctctggaacatca
tacctcaacagaactgaggcagctaatgtggagaaaataacgacaaggttgctaaaggct
ggagctaaaccagatcagattggcgtcatcaccccttatgaggggcagagatcctatctg
gtccagtacatgcagttcagtggctcccttcataccaagctttaccaggaggttgagatt
gccagtgtagatgcattccaaggcagagagaaagacttcatcatattgtcctgtgtgagg
gccaatgagcatcagggcatcggcttcctaaacgatcctcgtcgtctcaatgtggctctc
acgagagccaggtatggcgtgatcattgtgggcaaccctaaagctctgtccaagcagcca
ttatggaaccacctgctgaactactataaggagcagaaggtgttggtggaagggcccctt
aacaacctgagagagagcctcatgcagttcagcaagccttgcaagctggtcaacactatc
aaccctggcggtcgattcatgagcacagccatgtatgacgccagagaagccctcatccct
ggatctgtttacgatcgcagcagcaatgggcgcacatccaacatgtacttccagacacat
gaccagattggaatgattggtaccggccccaaccctttgacttctttgaacatccccatc
cccttcagcctggtcatgcccccgatacctcctcctggctacatggggcacgtcgacggg
ccaaaatcaggtcgtggaggcggcatgaagggtaaagctggtagtggaggagggggcggc
gcgcgtggtaatcgcccgagaaaccgtagcaacatggggaaccagagcggagggcatcct
gggggcagccaggctagccaggacctggtctcccagaccttctcccagggccctctgacc
caaggctacaacaacatgagtcagccgtcacagatgagtcagcctgggctctcccagcca
gagctttcccaggacagttaccttggagatgagttcaagtcccagattgatgtggctctg
tctcaggactccacctaccagggggagcgagcctaccagcatggtggtgtgactggactg
tcccagtactag
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