KEGG   Phycodurus eques (leafy seadragon): 133414635
Entry
133414635         CDS       T09682                                 
Symbol
thoc6
Name
(RefSeq) THO complex subunit 6 homolog
  KO
K13175  THO complex subunit 6
Organism
pee  Phycodurus eques (leafy seadragon)
Pathway
pee03013  Nucleocytoplasmic transport
pee03040  Spliceosome
Brite
KEGG Orthology (KO) [BR:pee00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    133414635 (thoc6)
  09122 Translation
   03013 Nucleocytoplasmic transport
    133414635 (thoc6)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:pee03019]
    133414635 (thoc6)
   03041 Spliceosome [BR:pee03041]
    133414635 (thoc6)
Messenger RNA biogenesis [BR:pee03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   Transport factors
    TREX complex
     133414635 (thoc6)
Spliceosome [BR:pee03041]
 Other splicing related proteins
  Spliceosome associated proteins (SAPs)
   TREX complex
    133414635 (thoc6)
SSDB
Motif
Pfam: WD40_CDC20-Fz WD40_WDHD1_1st WD40 Beta-prop_THOC3 Beta-prop_WDR3_1st Beta-prop_WDR5 WD40_Prp19 Beta-prop_IFT122_1st Beta-prop_NOL10_N Beta-prop_TEP1_2nd Beta-prop_EML_2 WDR55 Beta-prop_EML ANAPC4_WD40 WD40_Gbeta Beta-prop_WDR3_2nd EIF3I WD40_MABP1-WDR62_2nd Beta-prop_WDR36-Utp21_2nd NBCH_WD40 Beta-prop_WDR36-Utp21_1st Beta-prop_SCAP Beta-prop_ACSF4 Beta-prop_EIPR1 TRM82_WD Beta-prop_CAF1B_HIR1 DSE1_N WDR54 Beta-prop_RIG_2nd Beta-prop_VPS8 WD40_like CFAP251_N ASA1 Beta-prop_TEP1_C Beta-prop_WDR41 Beta-prop_SPT8 Beta-prop_WDR75_1st TRAPPC10_1st
Other DBs
NCBI-GeneID: 133414635
NCBI-ProteinID: XP_061556121
LinkDB
Position
16:complement(23394919..23403668)
AA seq 323 aa
MGPVELLHMSVFSQSFSPCGRFLAAGNNYGEIGIFSLCAALSPDVSEAGRKPVLTFPAHD
GPVFCLESFGGHLLSAGDGSVSAWNWAELIKKNVKALWTKRPQYKASMEIPEINAMAVNP
RDNSVVFGGGDNNVHVLDLENGVFKSVLRGHSDYVHCLSVREREGEILSGGEDGAVRMWD
SRTSQCVHCVDVHKYQKCARPQFGKWISCLTTDSDWMLCGGGPSLSLWHLRSLTPTSVFE
LNGCQKRASFFQDMILAVGQGPAVSHCLLGGQVKAQIPCTPNNINSLELNTNSAEHQVLT
VAGSSQYVDVFTNVSYRAFSLRF
NT seq 972 nt   +upstreamnt  +downstreamnt
atgggccccgtcgagctgttgcacatgtcggtgttctcgcaaagtttttcgccgtgcgga
cgcttcctggcggcggggaacaactacggagagatcggcatcttcagtttgtgcgcagct
ctgagtccggacgtgtcggaggcgggtcggaagcccgtgctgacctttccagctcacgac
ggtccggtcttctgtctggagtccttcggcggccatcttctgagcgccggcgacgggtcg
gtcagcgcctggaattgggccgaactcatcaagaagaacgtcaaagcgctgtggaccaag
agaccccaatacaaggccagcatggagatccccgagatcaacgccatggccgtcaaccct
cgagacaacagtgtggtgtttggcggcggtgacaacaacgttcacgtcttggacctggag
aacggcgtcttcaagtccgtcttgcggggacactcggactacgttcactgcctgagcgtg
agggagcgcgagggcgagattctgtcgggcggcgaggacggcgctgtccggatgtgggac
agcaggacgtctcagtgcgttcactgcgtggacgtgcacaagtaccaaaaatgtgcccgc
cctcagtttggcaagtggatcagctgtttaacgaccgactcggattggatgctgtgcggc
ggggggccatcgctttccctgtggcaccttcgttctctgacgccgacgtccgtcttcgag
ctgaacggctgccagaaacgagccagcttcttccaggacatgattctggcggtgggccaa
ggccccgccgtgtcccactgcctgctgggggggcaggtcaaggctcagatcccgtgcacg
cccaacaacatcaacagcctggagctcaacaccaacagtgcggaacaccaggtgttgacg
gtggcaggaagcagccagtacgtggacgtgttcaccaacgtgtcctacagagccttctca
ctccgcttttga

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