Phycodurus eques (leafy seadragon): 133414704
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Entry
133414704 CDS
T09682
Symbol
xab2
Name
(RefSeq) pre-mRNA-splicing factor SYF1 isoform X1
KO
K12867
pre-mRNA-splicing factor SYF1
Organism
pee
Phycodurus eques (leafy seadragon)
Pathway
pee03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
pee00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
133414704 (xab2)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pee03019
]
133414704 (xab2)
03041 Spliceosome [BR:
pee03041
]
133414704 (xab2)
Messenger RNA biogenesis [BR:
pee03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Other transport factors
133414704 (xab2)
Spliceosome [BR:
pee03041
]
Complex B
Other components
Prp19-related factors
133414704 (xab2)
Complex C
133414704 (xab2)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
HAT_Syf1_CNRKL1_C
HAT_Syf1_M
HAT_Syf1_CNRKL1_N
HAT_PRP39_C
HAT_PRP39_N
TPR_14
TPR_2
Suf
TPR_12
TPR_8
TPR_16
TPR_15
ARM_TT21_C
ARM_TT21
NRDE-2
LTN1_E3_ligase_6th
Tcf25
TPR_1
Motif
Other DBs
NCBI-GeneID:
133414704
NCBI-ProteinID:
XP_061556242
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Position
16:complement(19358604..19365771)
Genome browser
AA seq
850 aa
AA seq
DB search
MVEMPSLNGKQDVIFEDDDLPYEEEIIRNPYSVKCWMRYIEFKQNAAKSVLNMIYERALK
ELPGSYKLWYNYLRERRKQVKGKCINEPVYEEINNCHERALVFMHKMPRIWIDYCQFLVL
QCKITRSRRSFDRALRALPVTQHPRIWPLYLRFVRSLPLPETAIRVYRRYLKLSPENAEN
YIEYLKSVGRLDEAAVRLGAVVNDESFVSKEGKSNYQLWHELCDLISQNPDKVTSLNVGA
IIRGGLTRFTDQLGKLWCSLADYYIRSGLFEKARDVYEEAILTVVTVRDFTQVFDSYAQF
EESMIAAKMETTSELGQDEEEDIDLELRLTRFEELIARRPLLLNSVLLRQNPHNVHEWHK
RVKLYEGVPRQIINTYTEAVQTVDPLKATGKPHTLWVTFAKFYEENEQLDDARTIFERAT
KVNYKQVDDLATVWCEYGETELRHENYEQALRILRKATAIPSKKAEYFDASEPVQNRVYK
SLKVWSMLADLEESLGTFQSTKAVYDRIIDLRIATPQIVINYAMFLEEHNYFEESFKAYE
RGIALFKWPNVYDIWNTYLTKFIDRYGGKKLERARDLFEQAVDGCPAKFAKTIYLLYAKL
EEEYGLARHAMAVYERATEAVENEERHQMFNIYIKRAAEIYGVTYTRAIYQKSIEVLPDE
HSRDMCLRFADMESKLGEIDRARAIYSYCSQICDPRVTAVFWQTWKEFEIRHGNEDTIRE
MLRIKRSVQATYNTQVNFMSSQMLKATTSSTGTVSDLAPGQLGIDDMKMLEQKAQELAAE
AAQDKPKPKEKILFIRSDTSRSELAELAKQANPDEIDIDDEDEDDGQGPEEVQLEQKSVP
AAVYGGLKDD
NT seq
2553 nt
NT seq
+upstream
nt +downstream
nt
atggtagaaatgccgtcgctaaatggaaaacaagatgttatatttgaggacgacgatctt
ccgtatgaagaggaaattatcagaaatccatattcagtcaagtgctggatgcgttacatc
gagtttaaacagaatgcggccaaatccgtcctcaatatgatctatgaaagggctctgaaa
gagctacctggaagttataaactatggtacaattacctgagggagaggaggaaacaagtc
aaagggaaatgtatcaatgaaccagtttatgaagaaatcaacaactgccatgaaagagca
ctagtgtttatgcacaagatgccaaggatatggatcgattattgccagttcctggtgttg
cagtgtaagatcacaaggagtcggcgatcatttgaccgtgcactccgagcgcttcctgtt
actcagcatccacgcatctggcctctctatcttcgcttcgtccgaagcctgcctctgcca
gagacggctatacgagtctaccgcagataccttaagctttccccagagaatgcagagaat
tacattgagtacttaaaatctgttgggcgcctggatgaagctgctgtgcgtctcggggct
gttgtcaatgatgaaagctttgtctccaaagaaggcaaatctaactatcagttgtggcac
gagttatgcgacctgatttcacagaaccccgacaaggtgacttctctaaatgttggcgcc
atcatccggggtgggctcactcgctttacagaccagctcggcaagctttggtgctcctta
gctgattattacatcaggagcggcctctttgagaaggcccgtgatgtgtatgaggaggcc
attcttaccgtggtaactgtcagggatttcacacaagtctttgacagttacgctcagttt
gaggagagcatgatcgcagccaagatggagacaacctccgagttgggccaggacgaagag
gaggacatcgacctagagcttcgactcacccgctttgaggaactgatagcacgacgacct
cttcttctgaacagtgtactgttgcgccagaacccccacaatgtccatgagtggcacaaa
cgtgtaaaactgtacgagggcgttccacgacagatcatcaacacgtacacagaggcagtg
cagaccgttgatcccctgaaagccactgggaagcctcacacgctttgggtcacgtttgca
aaattctatgaggaaaatgaacagctggatgatgccaggaccatctttgagcgggccacc
aaagtgaactacaagcaggtggacgacctggccacagtgtggtgcgaatatggagagacg
gaactccggcacgagaactacgagcaggcactgaggatacttaggaaagccacagccatc
ccctccaagaaggctgagtactttgatgcctctgagccggtccaaaacagagtctacaag
tctttgaaggtctggtccatgttagcagacttagaagagagtcttggcacgttccagtct
acaaaagcagtgtatgaccgcattattgacctgcgcattgccacgccgcagatcgtcatc
aactatgccatgttccttgaagagcacaactactttgaggagagctttaaagcgtatgag
cgtggcatcgccctcttcaagtggccaaacgtttatgacatctggaacacttacctcacc
aagttcattgaccgatacggaggcaagaagctggagcgagccagagatctattcgagcaa
gccgtcgatggctgccctgccaaatttgcaaagaccatctacctgctgtatgccaagctg
gaggaggagtacggactggcacgccacgccatggcggtttatgaaagagcaacggaggcg
gtagaaaatgaggagagacaccagatgttcaatatctacatcaagagagcggctgaaata
tatggcgtcacgtacaccagggccatttaccagaagtctattgaggtactccctgatgag
cattccagggacatgtgcttgcgattcgccgacatggagagcaaactgggcgaaatcgat
cgggccagagccatctattcctactgctcccagatctgcgaccccagggtcacagctgtt
ttctggcagacgtggaaggaatttgagatacgtcacggaaacgaggacaccattcgagag
atgctgcgaatcaagcgcagcgtccaggctacttacaatacgcaggtcaacttcatgtcc
tctcagatgctgaaggccacaacaagctctacaggcactgtgtcagatcttgctccaggc
cagttgggaattgacgacatgaagatgttggagcagaaagcgcaggagcttgcagcagag
gcagcacaggataaacccaagccaaaagaaaagattctttttattaggagtgacacatct
cgcagcgagttggccgagctcgccaagcaagccaatccagatgagatagatatcgatgat
gaggatgaggacgatgggcaaggcccggaggaggtgcagctggaacagaagagcgtcccc
gctgctgtctacggaggcctgaaagatgattga
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