Phycodurus eques (leafy seadragon): 133416296
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Entry
133416296 CDS
T09682
Symbol
rad50
Name
(RefSeq) DNA repair protein RAD50 isoform X1
KO
K10866
DNA repair protein RAD50 [EC:3.6.-.-]
Organism
pee
Phycodurus eques (leafy seadragon)
Pathway
pee03440
Homologous recombination
pee03450
Non-homologous end-joining
pee04218
Cellular senescence
Brite
KEGG Orthology (KO) [BR:
pee00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
133416296 (rad50)
03450 Non-homologous end-joining
133416296 (rad50)
09140 Cellular Processes
09143 Cell growth and death
04218 Cellular senescence
133416296 (rad50)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
pee03032
]
133416296 (rad50)
03400 DNA repair and recombination proteins [BR:
pee03400
]
133416296 (rad50)
DNA replication proteins [BR:
pee03032
]
Eukaryotic type
DNA Replication Termination Factors
MRN complex
133416296 (rad50)
DNA repair and recombination proteins [BR:
pee03400
]
Eukaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
MRN(MRX) complex
133416296 (rad50)
BRCA1-C complex
133416296 (rad50)
NHEJ (non-homologous end-joining)
MRX complex
133416296 (rad50)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
AAA_23
Rad50_zn_hook
AAA_21
AAA_15
SbcC_Walker_B
SMC_N
ABC_tran
zf-met
AAA_29
AAA_13
AAA_16
AAA_22
Motif
Other DBs
NCBI-GeneID:
133416296
NCBI-ProteinID:
XP_061559090
LinkDB
All DBs
Position
17:complement(12120618..12150598)
Genome browser
AA seq
1312 aa
AA seq
DB search
MSKIDKMSILGVRSFGIEDKDKQVISFFSPLTVLVGPNGAGKTTIIECLKYATAGELPPG
SKGGAFVHDPKDVHETDVRAQIRLLFSDVNGEKVTIHRSMSCTQKAKNYSFKSLEQVITR
LKDGEKVSLSSKCGELDREMISALGVSKPVLNHVIFCHQEDSNWPLSEGKALKEKFDSIF
AATKYIKALDTMRQLRLKQNNTVRECQVELRFLKQNKEKAQQIREIVANKEAQLMASKDS
IHLIESQINPLENLLADIDLKLGKVMKLDNDIKALDSRKKQMEEDNKELEETMEQVFQGS
TEQLQELYQNHQKTVREKERRLTDCQKELERAGRECQRLNRVKADLLVEQGRLQLEADRH
TQNIKNRDTQVRLLSSQLEMEGYDRPPFTTLQLESFHRHLTQRLEQEKATVAQVMVDLQE
KEEQKQQSIDEIRDKKTGLERTVELKRDLQGKKQQELRIVRTELQRLEGSSGRMQELEND
LAKAERELQRALQMSNVEELKVEVVELQREKAELDRTQRQLDQEMGLLNIHTTARTQMDM
LTKDKKEKEEQVRKIKSRHSDDLVSLLGHFPNKRELEDWLYAKSKEIHSTRDKLAKLNKD
LASSEQNKSHIAAELRKKEQQLTNDEEKFFIVCGSQDLEQDLGKVKEDLEKISKQRAMLA
GATAVYTQFISQLTEEREPCCPVCQRTFPSEADLQEVISDMQSKLRLVPDKLKNTEQDLK
RKEKRRDEMMTLKPVRQSIVQLQEKELPELRNRLQSVNREIERLKSDVEEQETLLAMLMS
EEETAKACQQDIALMDRFLMDLKEVERKIAQNGAKLQGVDLTRTIQQVSQEKQETQLKLD
TACSKMELKRKLIQDQQDQIQMLKSCVNETKAEKLQLSSDMQKQQQLEEQCVDFTTEIQT
LTRDIREAKEQLSPLSATLDKMQQEKQELMERKRQKQEEGQEKINAIKEKVKTITILERD
ICKYLEEGKDEYKEQKESELQDTNTQLHEAERHKEKISKEMGNIRQDIDTQKVQERWLQD
NLTLRKRVEELKEVEAQREALCKDLGNMQVIQLRQERREAERKMEDLKKNRSIALGRQNG
FEEELLHYKKELREDQYNKADELYKNKMIVMRTTELVIKDLDLYYKALDQTIMKFHSMKM
DEINKIIRDLWRSTYRGQDIEYVEIRSDVDENSSAGVKRRVYNYRVVMVKGDTALDMRGR
CSAGQKVLASLIIRLALAETFCLNCGILALDEPTTNLDRENIESLAHALVEIIKSRSRQR
NFQLLIITHDEDFVELLGRSSYIEHFYRIRKNQDQNSEITKCSISSLSSFLH
NT seq
3939 nt
NT seq
+upstream
nt +downstream
nt
atgtccaaaatagacaagatgagcatcctcggggtgcgcagctttgggattgaggacaaa
gacaaacaagtcatctcgttcttctctcccctcacggttctggttggtccaaacggagca
ggcaaaacgaccattattgagtgcctcaagtatgccacagcaggagaacttcccccaggt
tctaaaggaggcgcttttgtccatgatccaaaggatgttcacgaaacagacgtgcgagcg
cagatacgacttctgttctctgatgtcaacggagagaaagtcaccatccatcgttccatg
tcctgcacccagaaagcgaagaactactcatttaaaagcttggagcaggttattacccgg
ctaaaggatggcgagaaggtgagcttgtcatccaagtgtggcgagttggaccgtgagatg
atatccgcactcggcgtgtccaagcccgtgttgaatcacgtcatattctgccaccaagag
gattccaactggccacttagtgagggcaaggcgctcaaagaaaagtttgattccatcttc
gctgcaaccaagtatatcaaagctctggacacaatgcgtcagttgcgtctcaagcagaac
aacaccgtgagagagtgtcaggtggagttgcgcttcttgaagcagaacaaagaaaaagcc
cagcaaattagagagattgttgccaacaaggaggctcagctgatggcctccaaggacagt
atccatctgattgaaagccagataaatccactggagaatctgctggcagacattgactta
aaactgggaaaagtaatgaagctggacaatgatattaaagctttggacagcaggaagaaa
cagatggaagaagacaacaaggagctggaggaaacaatggaacaggtgttccagggttcg
actgagcagctgcaggagctgtaccagaaccaccagaaaacagtgagggagaaggaacgc
aggctgaccgactgccagaaggagctggagcgagctggcagggagtgtcagagactcaac
agggtcaaggctgatctcttggtggaacaaggacgtttacagctggaggctgaccgccac
acacaaaacatcaaaaaccgtgacactcaggtccgtttattgtcgtcccaactggagatg
gagggctacgaccgaccgcctttcacgactcttcagcttgagagctttcatcgtcacctc
acacagagactggagcaggaaaaagccacagtcgctcaggttatggtggacttgcaggaa
aaggaggagcagaaacaacagtcaattgatgagatcagggacaagaagacgggcctggag
aggacagtggagctgaaaagagacctgcagggaaagaagcagcaagagctccggattgtc
cgcactgagctgcagaggcttgaaggttcgtccggcagaatgcaggagctggaaaatgat
ctggccaaagcggagcgtgagctgcagagagccctgcagatgtccaatgtagaggagctg
aaggtcgaggttgtggagctccagagagaaaaggcagagctcgaccgcacacaaagacag
ctggaccaagagatgggactgctcaacatacacacgactgcacgcacacagatggacatg
ctgacaaaggacaagaaagaaaaagaggagcaggtacgcaagatcaaatcgcgtcacagt
gacgatctggtgtcactgctgggccacttccccaacaaaagagagctggaggactggctc
tacgctaagtcaaaggaaatacacagcaccagggacaaactggccaaactcaataaggac
ttagcgtccagcgagcagaataagagccacattgctgctgagctacgtaaaaaggagcag
cagttgacaaatgacgaagaaaagttcttcattgtgtgcggaagtcaagatctggagcag
gaccttggcaaagtaaaggaggacctagaaaaaatctccaaacaaagagccatgctcgct
ggagccactgcagtctacacccagttcattagccagctgactgaggagagggagccctgc
tgccccgtctgccagcggacattcccgtccgaggctgacctgcaggaggtcatcagcgac
atgcagtccaaactgcgcctggttccagataagctgaaaaacacagagcaggacctgaag
aggaaggagaaaaggcgagatgagatgatgactctaaaaccagtcaggcagtccattgtg
cagttacaagagaaggagttacccgagctgagaaatcggttgcagagtgtgaacagagaa
attgagaggctgaaaagtgatgtagaggagcaggagactctgcttgcgatgctgatgtct
gaggaggaaacagccaaagcttgtcagcaggacattgccctcatggacagattcctgatg
gacctaaaggaagtggagaggaaaatagctcagaatggagccaaactccagggagtagac
ctgaccagaaccattcagcaagtcagtcaggagaagcaggagactcaactcaagttagac
accgcatgcagtaagatggaactgaaacgtaagttgatccaagaccagcaggatcagata
cagatgctgaagagttgtgtgaacgagaccaaagcagagaaactccagctgagcagcgac
atgcagaagcagcagcagctagaggagcagtgtgttgatttcaccacggagattcagacc
ttaacaagggacatccgggaggcaaaggaacagctgtctccgttgtccgccaccctagat
aagatgcagcaggagaaacaggaactgatggaacgtaaaaggcaaaaacaggaggaagga
caggagaagatcaacgctatcaaagagaaagtaaagaccatcaccatcttggaaagagac
atctgcaagtatcttgaagagggcaaagatgaatataaggagcaaaaagagtctgagctt
caggatactaacacccagctccacgaggctgaacgacacaaagagaagatcagcaaagag
atgggaaacatccggcaggacattgacactcaaaaggtgcaggagcgctggttacaggac
aacctgaccctaagaaagcgggttgaggagcttaaagaggttgaggctcagcgagaggcc
ctttgcaaagacctaggcaacatgcaagtgattcaactacgccaagaacgacgtgaagcc
gagcgtaagatggaggacctgaagaagaaccgcagcattgcactgggtcgccagaatggc
tttgaggaggagttgctgcattacaaaaaagagctgcgagaagaccagtacaataaagcg
gacgagctctacaaaaacaagatgattgtaatgcgcacgacagagctagtcatcaaagat
ctggatctctactacaaagcccttgatcaaactatcatgaagtttcacagtatgaagatg
gatgaaattaacaaaatcatcagagacctttggcgcagcacctatcggggacaagacatc
gagtacgtggaaatacgctcagatgtggacgagaactcgtctgccggagtaaaacgaagg
gtttacaactatcgagtagttatggtgaagggcgacaccgctttggatatgagaggacgg
tgcagtgctggacagaaggtgctggcatccctcattatccgtcttgccttggcagagacc
ttctgtctgaattgtgggattttggcactggatgagcccaccaccaacctggacagagaa
aacattgaatcgctggcacacgcccttgtcgaaataattaagagtcgttcacgccagcgc
aacttccagctgctgatcatcacgcatgacgaggactttgtggagttgctggggcgctcc
agttacatcgaacacttctaccgcatccgaaagaaccaggaccagaattctgagatcacc
aagtgcagcatcagctccctctcctccttcctgcactga
DBGET
integrated database retrieval system
