Phycodurus eques (leafy seadragon): 133416877
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Entry
133416877 CDS
T09682
Name
(RefSeq) cleavage and polyadenylation specificity factor subunit 3-like isoform X1
KO
K14403
cleavage and polyadenylation specificity factor subunit 3 [EC:3.1.27.-]
Organism
pee
Phycodurus eques (leafy seadragon)
Pathway
pee03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
pee00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
133416877
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
pee03021
]
133416877
03019 Messenger RNA biogenesis [BR:
pee03019
]
133416877
Transcription machinery [BR:
pee03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
133416877
Messenger RNA biogenesis [BR:
pee03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Cleavage and polyadenylation specificity factor (CPSF) complex
133416877
U7-dependent histone pre-mRNA processing factors
133416877
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
CPSF73-100_C
Beta-Casp
Lactamase_B_6
Lactamase_B
RMMBL
Anti-Pycsar_Apyc1
Lactamase_B_2
Lactamase_B_3
Beta_lactamase3
Coq4
Motif
Other DBs
NCBI-GeneID:
133416877
NCBI-ProteinID:
XP_061560154
LinkDB
All DBs
Position
18:complement(7672543..7682704)
Genome browser
AA seq
686 aa
AA seq
DB search
MTTKRKSEAVVPAEESDQLLIRPLGAGQEVGRSCIILEFKGRKIMLDCGIHPGLEGMDAL
PYIDLIDPAEVDLLLISHFHLDHCGALPWFLQKTSFKGRTFMTHATKAIYRWLLSDYVKV
SNISADEMLYTETDLEESMDKIETINFHEVKEVAGIKFWCYHAGHVLGAAMFMIEIAGVK
LLYTGDFSRQEDRHLMAAEIPSVKPDILITESTYGTHIHEKREEREARFCNTVHDIVNRE
GRCLIPVFALGRAQELLLILDEYWQNHPELHDIPIYYASSLARKCMAVYQTYINAMNDKI
RKAINVNNPFVFKHISNLKSMDHFDDIGPSVVMASPGMMQSGLSRELFESWCTDKRNGVI
IAGYCVEGTLAKHIMTEPEEISTMSGQKLPLKMSVDYISFSAHTDYQQTSEFIRALKPPH
VILVHGEQNEMARLKAALIREYEDNEQVHIEVHNPRNTEAVTLNFRGEKLAKVMGSLADK
TCTQGQRVSGILVKRNFNYHILTPSDLSEYTDLNVGTVTQTQAIPYTGPISLLVSQLRCL
TGDVEQVESAEKITIRIFKSITLVHEAGMVLLEWLANPLNDMYADVVTTVVLEVQSNPNA
QKILDARPEIFDQEVFIERLELMLHDMFGEDCVDFKDGEKVTVSVDGALAQVDPESREVT
CADDEALRDMLEVAVHRLYDALSPVY
NT seq
2061 nt
NT seq
+upstream
nt +downstream
nt
atgacaaccaaacgtaaatctgaggcagtagttcctgcggaggaaagcgaccagttgctt
attcgtccgctcggagctggccaagaagttggaaggtcctgtattatcctggagtttaag
ggacggaaaatcatgctggactgtggcatccacccgggcctggagggcatggacgcgctg
ccatacatcgacctgattgacccggccgaggtcgacctgctgctcatcagccacttccat
ctggaccactgtggagctctaccgtggttcctgcagaaaaccagcttcaaggggcgcacc
ttcatgacgcatgccaccaaggcaatctaccgctggctgctgtcagactacgtcaaagtc
agtaacatctcggccgatgaaatgctgtacacggagacggacctggaggagagcatggac
aagatcgagaccatcaacttccacgaggtcaaggaagtggccgggatcaagttctggtgc
tatcacgcaggacacgtgctgggcgccgccatgttcatgattgagatcgccggtgtcaag
ttgttgtatacaggggacttctcacgtcaggaggacagacacttgatggcggcggagata
ccgagtgtcaagccggacatccttatcacggagtccacatatgggacgcacatccacgag
aagcgtgaggagcgcgaggcgcgtttctgcaacacggtccatgacatcgtcaaccgagag
ggtcgttgtttgattcccgtcttcgcgctgggacgagcgcaggagcttctcctcatcctg
gacgagtactggcagaaccatccggagctccatgacattcccatctactatgcgtcatcc
ctggccaggaagtgcatggcggtctaccagacgtacatcaatgccatgaacgataagatc
cgcaaggccatcaatgtcaacaacccctttgtctttaagcacatcagcaacctcaagagc
atggaccatttcgatgacatcggccccagtgtagtgatggcatctccaggcatgatgcag
agcggtttatcccgagaactgttcgagagctggtgcaccgacaagaggaacggcgtcatc
atcgccggatactgcgttgaggggacgcttgccaagcacatcatgacggagccggaagag
atcagcaccatgtcgggacagaagctcccgctgaagatgtccgtggattacatctccttc
tcggcgcacaccgactaccagcagaccagcgagttcatccgagctctcaaaccgccgcac
gtgatcctggtccacggcgagcagaacgagatggcccggctgaaggctgcgctcatccgc
gagtacgaggacaatgagcaggtccacattgaagtccacaaccccagaaacacagaggct
gtcacgctcaacttccgaggagagaaactggccaaggtgatgggctcgctggcggacaag
acatgtactcaagggcagagggtatccggcatcctcgtcaagagaaacttcaactatcac
atcctcacaccctccgatctctcagagtacacggatctgaatgtgggcacggtcacgcaa
acgcaggccatcccatacacgggacccatttcactgctggtcagccaacttcgatgcctc
actggggacgtggagcaggttgagtctgctgagaagatcaccatccggatcttcaagagc
attactctggttcatgaagctggcatggttctgctggagtggctggcaaacccactgaac
gacatgtacgccgatgtggtgaccacggttgttctggaggtccagtccaaccccaacgcc
cagaagatactggacgctcggccagagatttttgaccaggaagtctttattgaaagactg
gaactcatgctacatgatatgttcggtgaagactgcgtagatttcaaagatggcgaaaag
gtgacggtcagcgtggacggcgctttggcacaggtggaccccgagagccgggaggtaacg
tgcgctgacgacgaggctctgagggacatgttggaggtggccgtccatcggctatacgac
gccctcagcccagtctactga
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