Phycodurus eques (leafy seadragon): 133417250
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Entry
133417250 CDS
T09682
Symbol
xrn2
Name
(RefSeq) 5'-3' exoribonuclease 2
KO
K12619
5'-3' exoribonuclease 2 [EC:3.1.13.-]
Organism
pee
Phycodurus eques (leafy seadragon)
Pathway
pee03008
Ribosome biogenesis in eukaryotes
pee03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pee00001
]
09120 Genetic Information Processing
09122 Translation
03008 Ribosome biogenesis in eukaryotes
133417250 (xrn2)
09123 Folding, sorting and degradation
03018 RNA degradation
133417250 (xrn2)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
pee03021
]
133417250 (xrn2)
03019 Messenger RNA biogenesis [BR:
pee03019
]
133417250 (xrn2)
03009 Ribosome biogenesis [BR:
pee03009
]
133417250 (xrn2)
03016 Transfer RNA biogenesis [BR:
pee03016
]
133417250 (xrn2)
Transcription machinery [BR:
pee03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
133417250 (xrn2)
Messenger RNA biogenesis [BR:
pee03019
]
Eukaryotic type
mRNA degradation factors
5'-3' decay
5' exonucleases
133417250 (xrn2)
Ribosome biogenesis [BR:
pee03009
]
Eukaryotic type
Pre-60S particles
RNases
133417250 (xrn2)
Transfer RNA biogenesis [BR:
pee03016
]
Eukaryotic type
tRNA degradation factors
Rapid tRNA decay (RTD) pathway factors
133417250 (xrn2)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
XRN_M
XRN_N
Motif
Other DBs
NCBI-GeneID:
133417250
NCBI-ProteinID:
XP_061560842
LinkDB
All DBs
Position
18:complement(8449548..8475247)
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AA seq
973 aa
AA seq
DB search
MGVPAFFRWLSRKYPSIIVHCVEEKGKVCNEVRIPVDTTKPNPNEVEFDNLYLDMNGIIH
PCTHPEDKPAPKNEDEMMVAIFEYIDRLVNIVRPRRVLYMAIDGVAPRAKMNQQRSRRFR
ASKEGMELTDEKQRMREEVIQRGGYLPPEEIKERFDSNCITPGTEFMDNLAQCLRYYVAD
RVSNDPGWQNITVFLSDASVPGEGEHKIMDYIRRQRGQPNHDPNTHHCLCGADADLIMLG
LATHEPNFTIIREEFKPNKPRPCALCGQIGHEIKECQGVAREKQGQHDEFAGTMPVSEQE
FIFIRLSVLREYLSRELTMASLPFPFDFERSIDDWVFMCFFVGNDFLPHLPSLEIREGAI
DRLVKIYKDVVHKTGGYLTENGYVNLARVEMIMDAVGVAEDNIFKKRKEDDESFKRRMKE
KRQRMKREQQGPAYLTGGQFAPHALGRGRTPDAVENARHQAYDMRMQSNRDAAQSLKAMM
RNGGGGNSAGPSDDANNNRGVKRKADSDDEPEPEDNVRLWEDGWKQRYYKTKFDVDVSDE
GFRQKVVQSYVEGLCWVLRYYYQGCASWKWYFPFHYAPFASDFKDIQGMFSDFERGTKPF
KPLEQLMGVFPAASGNFLPETWRNLMMSPDSSIIDFYPDDFAIDLNGKKYAWQGVALLPF
VDERRLWAALADVYPDLTSEEVRRNSLGSDMVFVGKSHPLSDFIQELYRAESHEPTEVPP
ELCHGIQGALSLDDDPILPDKTVSSPIPMLRDIAQNSAIGVRFKDPQYDEGFVFKAVLLP
GARLPTNVLKPEDWDRRGNQPWRPQLGFNPNRQQAHLDQSGFRALGHSLRNQHSGGGQYS
NAPPPSSYNHHGNYRSPRGGHQQSFQHSRSGGLLGTPPSFQHQPQFPRQQQQYRGGPQSW
DRAMQSQQAAYHHNAGRSGGGAGPSGYQQRFEQHRGSDWRERQEERGQQYQGYSSSNRGR
YPAPPPSRRYNWN
NT seq
2922 nt
NT seq
+upstream
nt +downstream
nt
atgggagtcccggcgtttttccgttggcttagtcgcaaatatccctccattattgtacat
tgtgtggaggagaagggtaaagtgtgcaatgaagtgcgtatccctgtcgacacaaccaag
ccaaaccccaatgaggtggagtttgacaatttgtacttggacatgaacggcatcattcac
ccttgtacacatccagaggacaaaccagcgcccaaaaacgaggatgagatgatggtggcc
atctttgagtacattgaccgtctggtcaatatcgtgcgtccaaggagagttttgtacatg
gccatcgatggtgtggctccacgtgccaaaatgaaccagcagcgctctcggcgctttcgc
gcctctaaagaaggcatggagcttactgatgagaagcaacgcatgcgggaggaggtcatc
cagagaggaggttacctgccgcctgaggagattaaagagaggtttgacagcaactgcatc
acaccagggacagagttcatggacaacctggcacagtgtcttcgctactacgttgcggac
cgagtcagtaatgacccagggtggcaaaacatcacggtcttcctgtctgatgctagcgtt
ccgggcgaaggcgaacataagatcatggactacatcaggagacagagaggtcagcccaac
catgaccccaacacccatcactgcctgtgcggtgctgacgcggacctcataatgttgggc
ttggctactcacgagcccaacttcaccatcatccgggaggagttcaaacccaacaagccc
cgaccctgtgcactctgcggacaaataggccacgaaatcaaagaatgtcagggcgtcgcc
cgagaaaagcaaggccagcatgatgaatttgcagggaccatgccagtgtctgagcaggag
tttattttcatcaggctgtctgtgctcagagagtatctgtctcgagagttgaccatggcc
agtctgccctttccttttgactttgagaggagcatcgacgactgggtgttcatgtgtttc
tttgtcggaaacgacttcctccctcacctgccgtccttggaaatcagagagggggcgata
gatcgactggtcaagatctacaaagatgtggtgcacaaaacaggaggctacctaacagaa
aacggctatgtcaacctggcacgtgttgagatgatcatggatgctgtgggcgtggctgag
gacaatatcttcaaaaaacgcaaagaagatgatgagagctttaagagaaggatgaaagaa
aaacgacaaaggatgaagagggagcagcaaggccctgcctacctcaccgggggccagttc
gcccctcacgcgctgggcagaggacgcacgccagacgccgtggagaacgcccgccaccaa
gcctacgacatgaggatgcagtccaacagggatgccgctcagtccctgaaggccatgatg
aggaatggcggtggtggcaactctgcaggccccagcgacgatgccaacaacaacagaggc
gtgaagaggaaagcggacagtgacgatgagcctgagccagaggacaacgtcaggttgtgg
gaggatggctggaagcagcgctactacaagaccaagtttgacgttgacgtgtctgacgaa
ggtttcaggcagaaggtggtccagtcgtatgtggagggtctgtgttgggtgctgcgctac
tactaccagggctgtgcctcatggaagtggtacttcccctttcactatgcccccttcgcc
tcagacttcaaagacattcaaggaatgttctctgactttgagagaggaaccaaaccgttc
aagcccctagagcagctgatgggagtgtttcctgccgccagtggcaacttcttgccagaa
acatggcggaacctaatgatgagtccagactcttccatcatcgacttctaccctgacgat
tttgcgattgacctgaatgggaagaagtacgcctggcaaggcgtagccctgttgccgttt
gtggacgaacggcgtctgtgggccgcactggccgatgtctatccagacctcacatccgaa
gaagtgaggagaaacagtctgggaagtgacatggtgtttgttgggaagtctcacccactg
tcggacttcatccaggaactctaccgtgcagaatctcatgagcctactgaggtgcctcca
gagctctgtcatggaatccagggtgcattatctcttgatgacgaccctatcctaccagat
aagacagtgagctcgcccatcccaatgctgcgggacatcgcacagaacagcgccatcgga
gtaagattcaaggatccccagtatgatgagggctttgtgttcaaggctgtccttcttccc
ggagccaggcttcccactaatgtgctgaagccggaggactgggataggcgggggaaccag
ccatggagaccccagctgggtttcaacccaaacaggcagcaggctcacttggaccagtcg
ggcttcagagctctgggtcactccctcagaaaccaacacagcggaggaggacagtacagc
aatgctccgcctcccagcagctacaaccaccacggaaactaccgctccccccgcggcggc
catcagcagtccttccaacattccagatcaggaggcctgttgggaactccgccatccttc
cagcaccagcctcagtttcctcgacagcaacagcagtaccgtggcggccctcagagctgg
gaccgggccatgcagtcgcagcaggcggcgtaccatcacaacgccggccgtagcggcggc
ggggccgggccgagcggctaccagcagcgctttgagcagcacagaggaagcgactggcgc
gagcggcaggaagagcgcggacagcagtaccagggctacagcagctccaacagaggacgt
taccctgcaccaccgccgtccagaagatacaactggaactga
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