Syntrophotalea acetylenivorans: A7E78_00505
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Entry
A7E78_00505 CDS
T04594
Name
(GenBank) hypothetical protein
KO
K08300
ribonuclease E [EC:
3.1.26.12
]
Organism
pef
Syntrophotalea acetylenivorans
Pathway
pef03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pef00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
A7E78_00505
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pef03019
]
A7E78_00505
03009 Ribosome biogenesis [BR:
pef03009
]
A7E78_00505
Enzymes [BR:
pef01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.26 Endoribonucleases producing 5'-phosphomonoesters
3.1.26.12 ribonuclease E
A7E78_00505
Messenger RNA biogenesis [BR:
pef03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
A7E78_00505
Ribosome biogenesis [BR:
pef03009
]
Prokaryotic type
rRNA processing factors
A7E78_00505
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_E_G
RNase_E_G_Thio
S1
HMD_N
Anti-TRAP
Motif
Other DBs
NCBI-ProteinID:
APG26479
UniProt:
A0A1L3GKM4
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All DBs
Position
complement(115341..117890)
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AA seq
849 aa
AA seq
DB search
MSKKMLINATHPEEHRVAIVDDGALSELDIEITGKQQTKGNIYKAVVVRVETGLQAAFVD
YGGERPGFLQIGEIHPSFHKADPNSETKGRPRINDLLRRGQELMVQVVKEERGTKGAALT
TYLSLPGRYMVLMPESDTKGISRKIEQESTRKKLKQAMSSMELPENIGYIVRTAGIGQKK
TELKRDVDYLLRVYEKICELGKEVKAPTLVYKESNLVIRSIRDYFSPDIDEVLVDDPKAA
QEGKEFFQEVMPEYAQLVKLHQERRPIFSRYQIEEQIEALSRNKVPLPSGGSIVIDTTEA
LVAIDVNSGKMATEKGVEATAFKSNMEAAAEAARQLRLRDLGGLIVIDFIDMRDRKHIRD
VEKCLKDALKSDKARVSVGRISQFGLLEMSRQRIKAALAEASYLPCPHCDGSGRIKSAEA
QALHFVRRLSAGMAKGQIGRVDGQVPIEVAAYLLNNKRAELIRLEQQYNATIYIKGCPDF
TNGQLEVDFIRREKEPQNSTQNYVEASSVKVDGPQEETVEKDGESDSAPGAEAEAESRPS
GRKRRRPRRRRKPAAASTEQTTATGSTEEGAAITPEEPVSEPQKAATTEPAPIVAEEQTA
PTAPTETSPAPTVEAKPVESQTEPVMAQQPAAGEPAPETGAEQKSDKPKPRRRPRKPAAA
RKPASTEAKPETVEEPPADTSKGDSAKEAAAEAPAEKPKPKTPRRRRSPAAKKTTEPEQS
DQPTTPAAPVEEARAKESKTGDEKAVEKPQRRRTRKPAAKQTESKPTEKATESPSADVAP
PKTADETGPTAAEPPKKPARRGRPRKKPAEEKPEPATDNMDKDKEKTKPKPRRKPAAKAT
SKPSESDTE
NT seq
2550 nt
NT seq
+upstream
nt +downstream
nt
atgagcaagaagatgctgatcaacgctacccatccggaagaacaccgggtagccatcgtc
gatgacggcgccctgagcgaactcgacatcgaaatcaccggaaaacaacaaaccaagggc
aatatttacaaggccgtcgtggtccgggtcgaaaccggtctgcaggcggcctttgtcgat
tatggcggtgagcggcccggatttctacagatcggagaaatccacccttccttccataaa
gccgaccccaacagcgaaaccaagggacgtccgcgcatcaacgacctgttgcgtcgcgga
caggaactgatggtgcaagtcgttaaggaagagcgaggcaccaaaggtgcggccctgacc
acctacctgtccctcccgggacgctacatggtattaatgccggaaagtgacaccaagggc
atttcccgtaaaatcgagcaggaatcgactcgaaaaaagcttaaacaagccatgagctcc
atggaactgccggagaatatcggttacattgtccgcactgccggcatcggccagaaaaaa
actgagctcaagcgggatgtggactacctgctgcgggtctacgaaaaaatctgcgaactg
ggtaaagaggtcaaagcgccgaccctggtctacaaggaatccaatctggtaatccgctca
atccgggactatttcagcccggatatcgacgaggtgctggtggacgatcccaaggcggcc
caggagggcaaagaatttttccaggaggtcatgccggaatacgcccaactggtaaaactt
caccaggagcgtcggccgatcttctcccgctatcagattgaagaacagatcgaggccctc
tcgcgcaacaaggttcccctgccctccggtggctctatcgtcatcgacaccactgaggca
ctggtcgccatcgatgtaaactcagggaaaatggccactgaaaaaggggtagaagcgacg
gccttcaaatcgaacatggaagccgccgctgaagcagcccgccagctacgcttgcgcgac
ctgggcggtctgattgttatcgacttcatcgacatgcgggatcgcaaacatatccgcgat
gttgaaaaatgcctcaaagatgcccttaagagcgacaaggcccgcgtctccgtcggtcgc
atcagtcaattcggcttattggagatgagccggcagcgtatcaaggcggccttggctgag
gcctcctatctgccatgcccccactgcgatggcagcggtcgaatcaagagcgcggaggct
caggctctgcattttgtccggcgcctgtctgccggaatggccaaaggccaaatcggccgg
gtggacggacaagttcccattgaagtcgcagcctacctgctgaacaataagcgcgccgag
ctgattcgtcttgaacagcaatataatgcgaccatctacatcaaaggttgcccggatttc
accaacggacaacttgaagtcgacttcatacgtcgggaaaaagagccgcagaattcgacc
cagaactatgtggaagcctcgtcggtaaaggttgatggcccacaggaagagactgttgaa
aaggatggtgaatccgattcggcccccggagccgaggcagaagccgagagccggcccagc
ggacggaaacgccgccgcccccgccgtcggcggaagccggcagcggcgagtactgaacaa
actactgcgactggcagcactgaagagggcgctgcaatcacgcctgaggaacctgtctct
gaaccgcaaaaggccgccactaccgaaccggcaccgatcgttgcagaggaacaaaccgca
ccaaccgctccaacggaaacttctccggctccaacagttgaagccaagccagtagaaagt
caaacagaaccggttatggctcagcagccggcagccggcgaaccggctccggaaactggt
gccgagcagaaaagcgacaaacccaaaccgcgccgccgaccacgcaaaccggccgctgcc
aggaaaccggcctcaacggaagcaaaaccggagacggtggaagaaccgcctgctgacacc
tcgaaaggggactcggcaaaggaagcggctgcagaagcaccggcggaaaagccgaaacct
aaaacaccccgtagaaggcgctcccctgcggcaaaaaagaccaccgagccggagcagtca
gatcagccaacaacgccagccgccccggtggaagaagccagggccaaagaatccaagacc
ggggatgaaaaggccgtagaaaagcctcagcgccgacgcacgcgcaaaccggctgcaaag
caaacagagagcaaacctacggaaaaggcaacggaatccccaagcgcggacgttgcccct
ccaaagacggccgacgaaacaggccccacggccgccgagcctcccaaaaagccggcgcgc
cgtggtcgtcctcgcaaaaaaccggcagaggaaaaacctgagcctgccaccgacaatatg
gacaaggataaagagaagacgaagcctaaaccgcgccggaaacccgctgccaaagcaacc
tcgaagcccagcgaatccgacaccgaataa
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