Syntrophotalea acetylenivorans: A7E78_07320
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Entry
A7E78_07320 CDS
T04594
Name
(GenBank) RNA helicase
KO
K03732
ATP-dependent RNA helicase RhlB [EC:
5.6.2.7
]
Organism
pef
Syntrophotalea acetylenivorans
Pathway
pef03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pef00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
A7E78_07320
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pef03019
]
A7E78_07320
Enzymes [BR:
pef01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
A7E78_07320
Messenger RNA biogenesis [BR:
pef03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
A7E78_07320
BRITE hierarchy
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Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
SNF2-rel_dom
AAA_11
AAA_22
Motif
Other DBs
NCBI-ProteinID:
APG27664
UniProt:
A0A1L3GP17
LinkDB
All DBs
Position
complement(1633557..1634843)
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AA seq
428 aa
AA seq
DB search
MKFTELDLPQPVLKGIEAVGFTDLTPVQEESIPLALAGKDVAGQAQTGTGKTAAFLIALF
TRLLQSKSKTSNNPRALIIAPTRELVVQIWEDAKGLGAFCPFKLQPIFGGVDYEKQRQAL
QDGVDVIIATPGRLIDYAKQGVFSFHRIEALVIDEADRMFDMGFIKDLRYIMRKLPPFEK
RQTMLYSATLSHRVMELAYEFMDLAEKVSVAPEQVTAERVEQVLYHVGRREKFALLLGLM
KKMEDPCRMLLFVNTKREAEHLTGRLKVNGYKAEVISGDIPQKKRMRILDDFKANRLHYL
VGTDVASRGIHIDGVTHVVNYDLPQDPEDYVHRIGRTARAGASGLAISFADEDLVFYLSD
IEGYIGFSIPAVFPENEDFCHDYKRYVPRKKVPADDRRRPAEKGRKPPRRRTGRSKGGTK
PGGGSSAK
NT seq
1287 nt
NT seq
+upstream
nt +downstream
nt
atgaaatttaccgaactggatttgccgcaaccggtgctcaagggtatcgaggcggtcgga
tttaccgatctgaccccggttcaagaagagtccatcccgctggctttggcgggtaaggat
gttgccggccaagcccagacgggcaccggcaaaacagccgcctttttaatcgcgctcttt
acgcgccttttgcagagcaagagcaagaccagcaacaatccccgtgctctgattatcgca
ccaacccgcgagttggtggtgcagatctgggaggatgccaagggactcggcgccttctgc
ccttttaagttgcagcctattttcggtggcgtcgactacgagaaacaacgccaggctctt
caggatggggtcgatgtgattatcgccactccgggacggttgatcgactacgccaagcag
ggcgtgttcagctttcaccgtatcgaagccttggtcattgacgaggccgaccgcatgttc
gacatgggctttattaaagatctgcgttatatcatgcgcaaattgccgccctttgaaaaa
cgccagaccatgctctattccgcgactctctcccatcgggtcatggaattggcctacgaa
tttatggatctggcggaaaaagtcagcgttgcccccgaacaggtgaccgccgaaagggtg
gaacaggtactctatcatgtaggtcggcgggagaaattcgctctgctgctcggcttgatg
aaaaagatggaagatccctgccgcatgttgttgtttgtcaataccaagcgggaggccgag
catctcaccggacggctcaaggtcaacggctacaaggccgaggttatttccggagatatc
ccgcagaagaagcgcatgcggattctggacgatttcaaagccaaccgtctgcactatctg
gtcggtaccgatgtcgcctcccgtggaatccatatcgatggcgtgacgcatgtggttaat
tacgacttgccccaggatcccgaggattacgtccatcgtatcggtcgtaccgccagggcc
ggagccagcggcctggctatcagttttgccgacgaagacctggttttttacctgagtgat
atcgaaggttatatcggtttcagcattcccgcggtattccccgagaatgaggacttctgt
cacgactataaacgctatgtgccccgcaaaaaggttccggccgatgaccgccggcgaccc
gctgaaaaggggcgcaagccgccccgtaggcgaactggtcgcagcaagggagggacgaag
cccggtggcggttcctcagccaagtaa
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