Syntrophotalea acetylenivorans: A7E78_07525
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Entry
A7E78_07525 CDS
T04594
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
pef
Syntrophotalea acetylenivorans
Pathway
pef03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
pef00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
A7E78_07525
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
pef03021
]
A7E78_07525
03400 DNA repair and recombination proteins [BR:
pef03400
]
A7E78_07525
Enzymes [BR:
pef01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
A7E78_07525
Transcription machinery [BR:
pef03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
A7E78_07525
DNA repair and recombination proteins [BR:
pef03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
A7E78_07525
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
RPOC_hybrid
Apocytochr_F_C
Peptidase_M23
Motif
Other DBs
NCBI-ProteinID:
APG27703
UniProt:
A0A1L3GP52
LinkDB
All DBs
Position
complement(1661562..1665743)
Genome browser
AA seq
1393 aa
AA seq
DB search
MEDIFSLFERPKDPLSFNAIRLSLVSPEKIRERSFGEVKKPETINYRTFKPEREGLFCAK
IFGPTKDYECNCGKYKRMKHRGIVCEKCGVEVIPSKVRRERLGHIDLACPVAHIWFLKSL
PSRIATLLDMTLKELERILYFEAYVVLDAGDTPLTVGQLLTEDKYRETMDEYAGQFVADM
GAEAIRQFLTEIELDELSSSLRLEMKEAASEAKRKKIAKRLKVVEAFKNSGNRPEWMILE
TLPVLPPELRPLVPLDGGRFATSDLNDLYRRVINRNNRLKRLMELRAPEVIIRNEKRMLQ
EAVDALFDNGRRGRAITGPNKRPLKSLSDMLKGKGGRFRQNLLGKRVDYSGRSVIVVGPE
LKLHQCGLPKKMALELFKPFIYNKLEEKGYCTTIKSAKKMVEKEKAEVWDVLEEVIREHP
VMLNRAPTLHRLGIQAFEPVLIEGKAIQLHPLVCTAFNADFDGDQMAVHLPLSIESQIET
RVLMMSTNNILSPANGKPIIVPSQDMILGLYYMTRERTFVTGTDKIFASRDEVRMAYDAG
ELDLQAKIKVRMRPVADAPVELIETTTGRVLLRDVVPEVIPFDQINQVMAKKQVANLIDV
CFRLAGNKETVLLADRLKETGYRYSTIAGISICLDDMVIPEAKDAFMGEAVEEVTEIQQQ
YTEGLITDGERYNKVIDIWAKCTEDIAQTMLENLSVDEVAGPDGKKIKTPSFNSIHMMAD
SGARGSAQQIRQLAGMRGLMAKPSGEIIETPITANFREGLTVLQYFISTHGARKGLADTA
LKTANSGYLTRRLVDVAQDAIITEQDCGTLDGIQVSSLTEGGEVIEPLGDRILGRTSLED
VLDPVTDEVLVEYNQELDEALVNKIENAGIEKLKIRSVLTCQSRRGICATCYGRDLARGH
LVNLGEAVGVIAAQSIGEPGTQLTMRTFHIGGTASRRAEQTSLESRFDGTLKYIDVNSVV
DSDGFHVVMNRNGEIAVVDETGRERERYGVVYGARLRIAPEGAVKTGDLLAEWDPYTMPI
LTEVPGRIRFGDVVEGVTMEEQVDEVTGLSRKVIIESKGADKRPRITLKDEEGKTLKLPN
GQPARYMLPVGANIVAIEDDMVSGGAILAKIPRETTKTKDITGGLPRVAELFEARKPKEF
AVISEIDGVVSFGKDSKGKRKVLVTPEVGESKEYLIPKGKHISVHEGDHVKAGEALMDGS
SNPHDILRVLGEKQLAKYLVDEVQEVYRLQGVKINDKHIEVIVRQMLRRVRIKELGDTRF
LLDDSVERWEFEQENQRVLAEGGTPAVGEPLMLGITKASLSTESFISAASFQETTKVLTQ
AAIEGKVDYLRGLKENVIMGRLIPAGTGISKYRSAKLAIEEPEEILEPPLVEEEEGLEGQ
VEDAGGNTEEAEK
NT seq
4182 nt
NT seq
+upstream
nt +downstream
nt
ttggaagatatattcagccttttcgaacggccgaaagatcctctcagctttaatgctatt
cggttgtctttggtttctcccgaaaagattcgggagcgttctttcggtgaagtaaaaaag
ccggaaactattaactaccggactttcaagcctgagcgtgaaggcctgttctgcgccaag
atattcggtccgaccaaggactacgaatgtaattgcggcaagtacaaacgcatgaaacat
cgcggtattgtctgcgaaaagtgcggtgttgaagttatacccagcaaggtgcgtcgggag
cgcctcggtcacatcgacctggcctgccccgtcgcacacatctggttcctcaagtctttg
ccgtcgcgtatcgcgacgctgctggacatgactctcaaggaacttgagcggatcctttat
ttcgaagcgtatgtggtgcttgacgcgggtgacactcccttgactgtcggtcagttgctg
accgaggacaagtaccgcgagaccatggacgagtatgccggtcagttcgtggctgacatg
ggcgccgaggccattcgtcaattcttgaccgaaattgaactcgacgagttgtcttccagt
ctgcgcctggaaatgaaagaagctgccagcgaggcaaagcgcaagaagattgccaagcgt
ctcaaggtcgtcgaggccttcaaaaatagcggtaatcgtccggagtggatgatcctggaa
actctgccggttctgccgcctgaattgcggccgctggttcctctggacggcggtcggttt
gctacttcggatctcaacgatctttatcgtcgagtgattaatcgtaacaaccgtctgaag
cgcctcatggagcttcgtgctcccgaagttattattcgcaacgaaaaacgtatgttgcag
gaggctgttgacgcactgttcgataacgggcggcgcggccgggccatcaccggccccaac
aaacggcctttgaaatccctgtccgatatgctcaagggcaagggcggtcgtttccggcag
aatctgctcggtaagcgtgtcgattactccggccgttcggttatcgttgtcggtcccgaa
ctgaaattgcatcagtgcggactgccgaaaaagatggccctggagctgttcaagcctttt
atctacaacaagcttgaggaaaaagggtactgcaccaccatcaagagcgccaaaaagatg
gtggaaaaagagaaggccgaggtgtgggacgtccttgaagaggtcattcgcgagcacccg
gtcatgcttaaccgtgctccgaccttgcaccgcctcggtattcaggcctttgaaccagta
ctgatcgagggtaaggccattcagctccatccgctggtctgtaccgctttcaacgccgac
tttgacggtgaccagatggcggttcatctgcctctttctatagagagccagatcgagacc
cgggtgttgatgatgtccaccaacaacatcttgtcgcctgccaacggtaagccgattatt
gtcccttctcaggatatgattctcgggctctactatatgacccgggagcggacatttgtt
acgggtacggacaaaatcttcgcctctcgagacgaagtacgtatggcttatgatgccggt
gagcttgatttgcaggccaagatcaaggtgcgcatgaggccggtagccgatgcgccggtt
gagttgatcgaaaccaccaccggccgtgtactgctgcgcgatgtggttcctgaggtcatc
cccttcgaccagatcaaccaggtaatggccaagaagcaggtagccaacctgatcgatgtt
tgtttccgcctggccggcaacaaggaaacggtccttttggctgaccgtcttaaggaaacc
ggctatcgttactcgactatcgccggcatttccatctgcctcgatgacatggtgattccc
gaagccaaggacgccttcatgggcgaggccgtggaagaggtcaccgaaattcagcagcaa
tacaccgaaggtttgattaccgacggcgaacgttacaacaaggtcatcgatatctgggcc
aagtgtactgaggatattgctcagaccatgctcgaaaacctctctgtcgatgaggtggct
ggtcctgatggtaaaaagatcaagacgccgtctttcaactccatccatatgatggccgat
tccggtgctcgtggtagtgcccagcagattcggcagctggccggtatgcgtgggttgatg
gccaaaccgtccggtgagattattgaaacgccgattacggcgaacttccgtgagggtctg
acggttctgcagtactttatctctactcacggtgcccgtaagggtctggctgacaccgca
cttaagaccgcgaactccggttatctgacccgtcgtttggtcgatgttgctcaggacgct
attatcacggaacaagactgcggcaccctcgacgggatccaggtttcatccctgactgaa
gggggagaagtcatcgaacccttgggagaccggattctcggtcgtacttccctggaagat
gttctcgatccggttaccgacgaagtgctggttgagtacaatcaggagctcgacgaggct
cttgttaacaagatcgaaaacgccggtatcgagaagcttaaaattcgctcggtacttacc
tgccagagtcggcggggcatttgcgccacctgctatgggcgggatctggcccgtggtcat
ttggttaacctgggcgaggcggtgggtgtcattgctgctcagtccatcggtgagcctggt
actcagttgaccatgcggaccttccacattggtggtaccgcttcccgtcgcgccgagcag
acctccctggagtcccgttttgacgggacgctcaagtatatcgatgtcaattcggttgtg
gatagcgacggcttccacgtggttatgaaccgcaacggtgaaattgccgtggttgacgag
actggccgagagcgggagcgttacggtgtcgtctatggtgcacggcttcgcattgcgccg
gagggggcggttaaaaccggcgatctgctggccgagtgggacccctacaccatgccgatc
ctgacggaggttcccggacggatccgctttggtgatgttgtcgaaggggtcaccatggag
gaacaggtcgatgaggttaccggcctgtcgcgcaaggttattatcgaatctaagggagcc
gacaaacgtcctcgtattacccttaaggacgaggaaggcaagacccttaagttgcctaat
ggccagccagcccgctatatgctgccggtcggcgccaatatcgtggctattgaggacgat
atggtcagtggtggtgcgatcctggcgaaaattccgcgagagaccaccaagaccaaggat
atcaccggcggtttgccccgtgttgccgagctctttgaggctcgcaaacccaaggaattt
gccgtcatcagcgaaatcgacggcgtggtttctttcggtaaggactccaagggcaagcgc
aaggtgctggtgactccggaagtcggcgagtccaaggagtacctgatccccaaagggaag
cacatcagtgttcacgagggggatcatgtcaaggctggcgaagccctcatggatggctcc
agcaatccccatgatattttgcgggtgctcggcgaaaagcagttggccaagtacttggta
gacgaggttcaggaagtctatcgactgcaaggggtaaaaatcaacgataagcacatcgaa
gttatcgttcgccagatgctgcgtcgcgtacgcatcaaagaactgggcgatacgcgattc
ctgctggacgattcggtagagcggtgggagttcgaacaggagaaccagcgggtcttggca
gaaggtggcactcctgccgttggtgagcctctcatgctagggatcaccaaggcctctttg
tccactgagtctttcatctctgccgcttctttccaggagaccaccaaggttctgacccag
gccgctatcgaaggcaaggtcgattatctgcggggcctcaaagagaatgtcatcatgggc
cgattgattccggccggtaccggcatctccaaataccgcagcgccaagttggctatcgag
gaacctgaagaaattcttgagccgccactggttgaagaagaagagggtttggagggacaa
gtagaggatgccggcggcaacacagaagaggcagaaaagtag
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