Syntrophotalea acetylenivorans: A7E78_12790
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Entry
A7E78_12790 CDS
T04594
Name
(GenBank) ribonuclease Y
KO
K18682
ribonucrease Y [EC:3.1.-.-]
Organism
pef
Syntrophotalea acetylenivorans
Pathway
pef03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pef00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
A7E78_12790
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pef03019
]
A7E78_12790
Messenger RNA biogenesis [BR:
pef03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
A7E78_12790
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GFIT
Motif
Pfam:
RNase_Y_N
HD
HDOD
KH_1
KH_KhpA-B
KH-I_KHDC4-BBP
KH_2
Propep_M14
Motif
Other DBs
NCBI-ProteinID:
APG28644
UniProt:
A0A1L3GRS3
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Position
2828030..2829592
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AA seq
520 aa
AA seq
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MSIEIVFLLVGVAVVAGAVIGTILRNRISGSQVAAAKQTASQILTEADKEADIVRKEAAI
QAKDALLAAKAEWEGEAKEMRRELQAQEKRLLQREENIDRKMTQLEEREGALSRREKHLG
GQEDRVKELESEVDKLIAEQTRRLEGLSGLSAEEARQQLMANMESQARHDCAKRIKQIED
EARETADKKAKEVLALAVQRYAGDYVAEKAVSVVALPSDEMKGRIIGREGRNIRAIEAAT
GIDLIIDDTPEAVIISGFNPVRREVARISLERLITDGRIHPARIEEVVQKATEEVDNSIR
EAGEQATFDVGVHGIHPEVIKLVGRLKYRTSYGQNVLQHSIEVAFLCGIMAAELGINVKQ
AKRAGLLHDIGKAVDHEIEGSHAVIGADLARKYGESPKVVHALAAHHEDEKPSTVLAVLV
QAADALSGARPGARREMLETYVKRLADLERIGTSFKGVTSCFAIQAGREIRVMVASDKVS
DVESHVLAKDIAHKVEGEMTYPGQIKVNVIRETRAVEYAK
NT seq
1563 nt
NT seq
+upstream
nt +downstream
nt
ttgagtatagagattgtgtttttattggtcggtgtcgccgtcgttgcaggagccgtgatc
gggacgattctgcgtaatagaatttccgggtctcaggtcgccgcagccaagcagacggcc
agtcaaattctgaccgaggcggataaggaagcggatattgttcgcaaggaagcggctatt
caagcgaaagacgccctccttgcagccaaggctgagtgggaaggtgaagccaaggagatg
cgccgcgagctgcaagctcaggagaaacggctactgcagcgtgaagaaaatattgatcgg
aaaatgacccagcttgaggagcgcgaaggagcgttgagccggcgtgaaaagcatcttggt
ggccaggaagaccgggtcaaggagctggaatcggaggttgataagctgatcgctgagcag
acaaggcgcctggagggtttgtccggacttagcgccgaagaagccaggcaacagctcatg
gccaacatggagagtcaggctcgtcatgactgtgccaagcgcatcaagcagatcgaagat
gaagcccgtgaaactgccgacaagaaagccaaagaagttttggcgctggcggtacagcgt
tacgccggcgactacgtggccgaaaaggcggtcagcgtggtggctctgccctcggacgaa
atgaaagggcgaatcatcggccgcgaaggtcggaacattcgtgctattgaagcggcaacc
ggtatcgacctgattatcgacgatacgcccgaggcggtgattatctccggtttcaacccg
gtgcggcgtgaagtggcgcgtatctctttggagcgcttgatcacagatggccgtattcat
cctgcccgtatcgaggaagttgttcagaaggctaccgaggaggtagataactccattcgt
gaggcgggagaacaggcgaccttcgacgttggcgtacatggtatccatcccgaagtgatc
aagcttgttggccgcctcaagtatcgcacctcctatggccagaacgttctgcagcactcc
atcgaggtagcctttttgtgcggcatcatggctgctgagttgggtatcaatgttaaacag
gccaagcgagccgggctgctgcacgatatcggcaaggccgtcgatcatgagatcgaaggt
tcccacgcggttatcggtgccgacctggcccgtaaatacggtgagtcgcctaaggtggtc
catgccctggccgcccaccatgaagatgaaaagccttctaccgtgttggcggtattggta
caggctgccgatgctctttccggagcgcgccccggagcgcggcgtgagatgctggaaacc
tacgttaagcgccttgctgacctggagcgtatcgggacctcctttaaaggcgtcaccagt
tgtttcgctattcaggccggtcgggaaatacgggtcatggtcgccagcgacaaggtttcc
gatgtggagtctcatgttctggccaaggatatcgcccataaggtcgaaggcgaaatgact
tatcccgggcagattaaagtcaacgtgatccgtgagactcgggccgtcgaatacgccaag
tag
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